Rh1CG229800

Elicitor-responsive protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000507
Physical Location & Seq
Forward (+)
48493243 .. 48495062
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG229800.1

Sequence Viewer

Length: 405 bp
ATGGACCCCTATGTCCTTTTGACTGTAAATACCCAAGAGAAGAAAAGCACTGTGGTTTCAGCTCAAGGATCTAACCCAGAATGGAATGAGACTTTTCTATTCACTATCTCGGACGATTCTGCTGACCTTCACTTGAAAATAATGGAGAAGGACAACTTCAGCGCAGATGATTATGTTGGAGAAGCAATCATTTCTCTAGAGCCAGTTTTTGAAGAAGGAAGCCTTTTGCCAACTGCATACAATGTTGTTAATCAGGAGAAGGAATATCGTGGAGGAATTAAAGTTGGACTCAAATTCACTCCCGAGGCTGAGCCTGAAGAGAGAAGTGAGTATCGTTCTGGAGAGGGCGCTGAAACAGAGGAGAGCTATGGTGGATGGAAACAATCTGCTTACGGCGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

4.27

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 1 - 75 2.5e-16 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 2 cut(s) 142, 336
AgsI TTSAA 2 cut(s) 136, 212
AluBI AGCT 2 cut(s) 62, 366
AluI AGCT 2 cut(s) 62, 366
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 302
ApoI RAATTY 1 cut(s) 293
AspLEI GCGC 2 cut(s) 164, 350
AspS9I GGNCC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 4
BccI CCATC 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 351
BlpI GCTNAGC 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 302
Bsp143I GATC 1 cut(s) 68
Bsp1720I GCTNAGC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 25, 52
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 380
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 2 cut(s) 164, 350
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 48
CfoI GCGC 2 cut(s) 164, 350
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 6 cut(s) 62, 202, 222, 308, 313, 366
CviKI_1 RGCY 6 cut(s) 62, 202, 222, 308, 313, 366
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 142, 336
Eco88I CYCGRG 1 cut(s) 302
FaiI YATR 4 cut(s) 12, 174, 238, 369
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 207, 239
FokI GGATG 1 cut(s) 387
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 163, 349
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 351
HhaI GCGC 2 cut(s) 164, 350
Hin6I GCGC 2 cut(s) 162, 348
HinP1I GCGC 2 cut(s) 162, 348
HinfI GANTC 2 cut(s) 116, 288
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 4 cut(s) 197, 254, 302, 339
HpyAV CCTTC 4 cut(s) 137, 142, 209, 253
HpyCH4III ACNGT 2 cut(s) 25, 52
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 309
HspAI GCGC 2 cut(s) 162, 348
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 90, 216, 239, 324, 327
MaeI CTAG 1 cut(s) 197
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 3 cut(s) 52, 224, 329
MflI RGATCY 1 cut(s) 68
MluCI AATT 2 cut(s) 276, 293
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 2 cut(s) 157, 265
MnlI CCTC 5 cut(s) 266, 298, 337, 352, 391
MseI TTAA 2 cut(s) 249, 279
NdeII GATC 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 116
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 68
SaqAI TTAA 2 cut(s) 249, 279
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 282
SetI ASST 3 cut(s) 64, 129, 368
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 276, 293
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 25, 52
TasI AATT 2 cut(s) 276, 293
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 249, 279
Tru9I TTAA 2 cut(s) 249, 279
TscAI CASTG 1 cut(s) 55
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.