FvH4_7g13500

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000507
Physical Location & Seq
Forward (+)
12106154 .. 12109725
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13500.t1

Sequence Viewer

Length: 1005 bp
ATGGTAACTTTGAGCACTGGAAACTGCTCTCATCCAACCATGCCTCGAGGAACACTTGAAGTTGTTCTTGCTGATGCCAGAGGCCTTGACAACAATGATTTTCTGGCTAAGATATCCCCCTATGCTGTTTTGACTGTAAAGACCCAAGAGAAGAAAAGTACTGTGCTTACAGGGAAAGGATCAAACCCAGAATGGAATCAATCTTTTCTGTTCACAATTTCGGATGATGAAGTCAAGGAACTCCATCTGACAATTATGGACAAAGATAACTTCAGTGCAGATGATTATGTTGGAGAAGCAACCATTCCTTTACTGCCAGCTTTTGTCAAAGGAACTGTGAACCCAACTACATACAACATTGTCAATAAGGAGAAGGAATTTTGTGGTGGGGTTAAACTTGGACTCACTTTCACTCCTGAATCTGGTTTTCTACCTGGGAGAAGCGATCATGGTTCTGGAGAACATGGTGAGGAGGGCTCTGGTGGATGGAAACAGTCATCTGATGGGGAGGAAATACCGGGTGGATGGAAACAATCATCTCTTGGGGAGGAGAGACTAGGTGGAAGGAATGAACCATCTTATGGGGAGGAGAGACATGGTGGGAGGAATGAGCCGCCTTATGGGGAAGAAAGACCACCTTTTGGGGAGGAGAGACCACCTTTTGGGGAGGAGAGGCCACCTTACGGGGAAGAGAGACCACCTTACAGGGAGGAGAGACCACCTTATGGGGAAGAGAGACCACCTTACAGGGAGGAGAGACCACCTTACGGGGAAGATAGGCCACCTTTCAGAGGCGAGAGACCACCTTACGGGGAAGATAGGCCACCTTTCGGGGGTGAGAGACCACCTTTCAGGGGGGAGAGACCACCTTATGGGGAGGAGCGGCCACCTTTCGGGGAGGAGGGACCGCCTTTTGGGGAGGAAAGACATGGTGGAAGGAATGAACCGCCTTATGGGGAGAGACCAGGTGGATGGAAACACTCGCCTTCCGGTGAGGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

335

Amino Acids

37.19

Weight (kDa)

4.94

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 17 - 118 2.4e-20 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 45
AccB7I CCANNNNNTGG 5 cut(s) 581, 641, 662, 725, 872
AccBSI CCGCTC 1 cut(s) 883
AciI CCGC 4 cut(s) 614, 883, 908, 947
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 884
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 256
AfaI GTAC 1 cut(s) 160
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 2 cut(s) 433, 964
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 5 cut(s) 82, 674, 779, 821, 884
ApoI RAATTY 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 905
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 479, 848, 1004
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 1 cut(s) 905
BanII GRGCYC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 17
BccI CCATC 6 cut(s) 252, 480, 497, 519, 583, 966
BciT130I CCWGG 2 cut(s) 435, 966
BcnI CCSGG 1 cut(s) 519
BfaI CTAG 1 cut(s) 557
BisI GCNGC 2 cut(s) 614, 884
BlsI GCNGC 2 cut(s) 615, 885
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 3 cut(s) 435, 519, 966
Bme18I GGWCC 1 cut(s) 905
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 905
BmiI GGNNCC 1 cut(s) 906
BmrFI CCNGG 3 cut(s) 435, 519, 966
BmsI GCATC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 519
BsaI GGTCTC 9 cut(s) 646, 688, 709, 730, 751, 793, 835, 856, 955
BsaJI CCNNGG 1 cut(s) 434
BsaWI WCCGGW 1 cut(s) 989
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse1I ACTGG 1 cut(s) 22
BseBI CCWGG 2 cut(s) 435, 966
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 5 cut(s) 31, 229, 491, 530, 977
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 9 cut(s) 485, 563, 602, 662, 683, 725, 767, 893, 914
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 5 cut(s) 84, 676, 781, 823, 886
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 518, 990
BslFI GGGAC 1 cut(s) 918
BsmFI GGGAC 1 cut(s) 918
BsnI GGCC 5 cut(s) 84, 676, 781, 823, 886
Bso31I GGTCTC 9 cut(s) 646, 688, 709, 730, 751, 793, 835, 856, 955
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 17, 479
Bsp143I GATC 2 cut(s) 179, 445
BspACI CCGC 4 cut(s) 614, 883, 908, 947
BspANI GGCC 5 cut(s) 84, 676, 781, 823, 886
BspLI GGNNCC 1 cut(s) 906
BspPI GGATC 1 cut(s) 187
BspTNI GGTCTC 9 cut(s) 646, 688, 709, 730, 751, 793, 835, 856, 955
BsrBI CCGCTC 1 cut(s) 883
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 2 cut(s) 179, 445
Bst2UI CCWGG 2 cut(s) 435, 966
Bst4CI ACNGT 4 cut(s) 136, 163, 337, 495
Bst6I CTCTTC 2 cut(s) 684, 726
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 108
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 5 cut(s) 31, 229, 491, 530, 977
BstKTI GATC 2 cut(s) 182, 448
BstMBI GATC 2 cut(s) 179, 445
BstNI CCWGG 2 cut(s) 435, 966
BstSCI CCNGG 3 cut(s) 433, 517, 964
BstXI CCANNNNNNTGG 1 cut(s) 972
BsuRI GGCC 5 cut(s) 84, 676, 781, 823, 886
BtsCI GGATG 5 cut(s) 31, 229, 491, 530, 977
BtsIMutI CAGTG 2 cut(s) 15, 280
Cac8I GCNNGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 905
CsiI ACCWGGT 1 cut(s) 964
Csp6I GTAC 1 cut(s) 159
CviAII CATG 5 cut(s) 40, 449, 464, 596, 929
CviJI RGCY 9 cut(s) 84, 107, 320, 477, 613, 676, 781, 823, 886
CviKI_1 RGCY 9 cut(s) 84, 107, 320, 477, 613, 676, 781, 823, 886
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 181, 447
DpnII GATC 2 cut(s) 179, 445
EaeI YGGCCR 1 cut(s) 884
Eam1104I CTCTTC 2 cut(s) 684, 726
EarI CTCTTC 2 cut(s) 684, 726
Eco147I AGGCCT 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 479
Eco31I GGTCTC 9 cut(s) 646, 688, 709, 730, 751, 793, 835, 856, 955
Eco32I GATATC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 905
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 433, 964
EcoRV GATATC 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 479
FaeI CATG 5 cut(s) 43, 452, 467, 599, 932
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 622, 654
FaqI GGGAC 1 cut(s) 918
FatI CATG 5 cut(s) 39, 448, 463, 595, 928
Fnu4HI GCNGC 2 cut(s) 614, 884
FokI GGATG 5 cut(s) 18, 236, 498, 537, 984
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 2 cut(s) 614, 884
FspBI CTAG 1 cut(s) 557
GluI GCNGC 2 cut(s) 614, 884
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 5 cut(s) 84, 676, 781, 823, 886
HapII CCGG 2 cut(s) 518, 990
Hin1II CATG 5 cut(s) 43, 452, 467, 599, 932
HinfI GANTC 3 cut(s) 196, 402, 419
HpaII CCGG 2 cut(s) 518, 990
HphI GGTGA 3 cut(s) 479, 848, 1004
Hpy166II GTNNAC 2 cut(s) 213, 340
Hpy188I TCNGA 4 cut(s) 223, 249, 502, 791
Hpy188III TCNNGA 2 cut(s) 416, 456
Hpy8I GTNNAC 2 cut(s) 213, 340
HpyAV CCTTC 4 cut(s) 367, 558, 930, 996
HpyCH4III ACNGT 4 cut(s) 136, 163, 337, 495
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 5 cut(s) 43, 452, 467, 599, 932
Kzo9I GATC 2 cut(s) 179, 445
LmnI GCTCC 1 cut(s) 880
LweI GCATC 1 cut(s) 64
MabI ACCWGGT 1 cut(s) 964
MaeI CTAG 1 cut(s) 557
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 181, 447
MbiI CCGCTC 1 cut(s) 883
MboI GATC 2 cut(s) 179, 445
MboII GAAGA 6 cut(s) 163, 638, 701, 743, 785, 827
MhlI GDGCHC 2 cut(s) 17, 479
MluCI AATT 3 cut(s) 216, 252, 377
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 2 cut(s) 59, 271
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 393
MspI CCGG 2 cut(s) 518, 990
MspR9I CCNGG 3 cut(s) 435, 519, 966
MvaI CCWGG 2 cut(s) 435, 966
NciI CCSGG 1 cut(s) 519
NdeII GATC 2 cut(s) 179, 445
NlaIII CATG 5 cut(s) 43, 452, 467, 599, 932
NlaIV GGNNCC 1 cut(s) 906
PaeR7I CTCGAG 1 cut(s) 45
PceI AGGCCT 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 196, 419
PflMI CCANNNNNTGG 5 cut(s) 581, 641, 662, 725, 872
PkrI GCNGC 2 cut(s) 615, 885
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
Psp6I CCWGG 2 cut(s) 433, 964
PspGI CCWGG 2 cut(s) 433, 964
PspN4I GGNNCC 1 cut(s) 906
PspPI GGNCC 1 cut(s) 905
PspXI VCTCGAGB 1 cut(s) 45
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 614, 884
Sau3AI GATC 2 cut(s) 179, 445
Sau96I GGNCC 1 cut(s) 905
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 3 cut(s) 435, 519, 966
SduI GDGCHC 2 cut(s) 17, 479
SexAI ACCWGGT 1 cut(s) 964
SfaNI GCATC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 905
SlaI CTCGAG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 3 cut(s) 216, 252, 377
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 4 cut(s) 614, 883, 908, 947
SspMI CTAG 1 cut(s) 557
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 3 cut(s) 433, 517, 964
TaaI ACNGT 4 cut(s) 136, 163, 337, 495
TaqI TCGA 1 cut(s) 46
TasI AATT 3 cut(s) 216, 252, 377
TatI WGTACW 1 cut(s) 158
TauI GCSGC 2 cut(s) 616, 886
TfiI GAWTC 2 cut(s) 196, 419
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 22, 280
TspDTI ATGAA 3 cut(s) 243, 585, 957
TspRI CASTG 2 cut(s) 22, 280
Van91I CCANNNNNTGG 5 cut(s) 581, 641, 662, 725, 872
VpaK11BI GGWCC 1 cut(s) 905
XagI CCTNNNNNAGG 1 cut(s) 789
XapI RAATTY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 557
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.