RLG00000028302

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000507
Physical Location & Seq
Reverse (-)
21202054 .. 21202724
671 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028302

Sequence Viewer

Length: 384 bp
ATGAATCCCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAAGTACTGTTGCCAAAGGGCAAGGATCTGAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGATGTTCCGGAACTTCATTTGAAAATAATGGATGAAGACAACTTTACCGCTGATGATTATGTTGGAGAAGCAACCATTTCTTTAGAGCCAGTGTTCAATGAAGGAATTGTTCCACCAACTGCGTACAATGTTGTCAACAAGGACCAGGAATATCATGGGGAGATCAAAATTGGACTCAATTTCACTCCTGAGCCAGAGACGAACAGCTTCTGTTCAGGACACTATGGGGGTGTTGAGGATTATGGAGGATGGAAAGAATCAACTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

128

Amino Acids

14.2

Weight (kDa)

4.37

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 1 - 71 6.4e-15 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 76
AfaI GTAC 2 cut(s) 49, 239
AgsI TTSAA 3 cut(s) 28, 136, 211
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 93, 321
AluI AGCT 2 cut(s) 93, 321
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 324
Aor13HI TCCGGA 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 94, 100
AvaII GGWCC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 35, 156
BccI CCATC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 305
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 260
BpiI GAAGAC 2 cut(s) 35, 156
Bpu10I CCTNAGC 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 203
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 151, 368
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 305
BsmBI CGTCTC 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 68, 276
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 121
BspPI GGATC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 203
BssMI GATC 2 cut(s) 68, 276
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 52, 106
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 151, 368
BstKTI GATC 2 cut(s) 71, 279
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 2 cut(s) 68, 276
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstV2I GAAGAC 2 cut(s) 35, 156
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsCI GGATG 2 cut(s) 151, 368
BtsIMutI CAGTG 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 48, 238
CviAII CATG 2 cut(s) 81, 269
CviJI RGCY 4 cut(s) 93, 202, 307, 321
CviKI_1 RGCY 4 cut(s) 93, 202, 307, 321
CviQI GTAC 2 cut(s) 48, 238
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 70, 278
DpnII GATC 2 cut(s) 68, 276
Eco47I GGWCC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 2 cut(s) 84, 272
FaiI YATR 6 cut(s) 12, 82, 174, 270, 339, 357
FatI CATG 2 cut(s) 80, 268
FokI GGATG 2 cut(s) 158, 375
HapII CCGG 1 cut(s) 122
Hin1II CATG 2 cut(s) 84, 272
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 3 cut(s) 4, 288, 371
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 94, 100
Hpy166II GTNNAC 2 cut(s) 102, 250
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 122, 302, 330
Hpy8I GTNNAC 2 cut(s) 102, 250
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 52, 106
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 2 cut(s) 84, 272
Kpn2I TCCGGA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 68, 276
LpnPI CCDG 8 cut(s) 90, 135, 216, 245, 272, 315, 315, 321
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 70, 278
MboI GATC 2 cut(s) 68, 276
MboII GAAGA 3 cut(s) 40, 52, 161
MflI RGATCY 1 cut(s) 68
MluCI AATT 3 cut(s) 219, 282, 292
MlyI GAGTC 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 343, 353
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
NdeII GATC 2 cut(s) 68, 276
NlaIII CATG 2 cut(s) 84, 272
NmuCI GTSAC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 4, 371
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspPI GGNCC 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 2 cut(s) 49, 239
RsaNI GTAC 2 cut(s) 48, 238
Sau3AI GATC 2 cut(s) 68, 276
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 260
SetI ASST 2 cut(s) 95, 323
SinI GGWCC 1 cut(s) 256
Sse9I AATT 3 cut(s) 219, 282, 292
SsiI CCGC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 52, 106
TasI AATT 3 cut(s) 219, 282, 292
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 4, 371
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 5 cut(s) 17, 102, 119, 162, 228
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.