Rh1BG216000

elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000507
Physical Location & Seq
Forward (+)
33646650 .. 33647848
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG216000.1

Sequence Viewer

Length: 276 bp
ATGGTAATGGTTATTGATTCAGCAGAGGTGAAAAGCTGTGGATTGATGGTAATGGTTGGAATTGCAGAGCTAAACTGGATCCCTAGCTATGTCATTTTCACTTTGAAGACCCAAGAGAAGAAAAGCACTGTTGCCAAAGGGCAAGGATCTAAACCAGCATGGAATGAAAGCTTCTTGTTCACCGTCACCAATGATGTTTCGGAACTTCATTTGAAAATAATGGATGAAGACACCTTTACCGCTGATGATTTGTTGGAGAAGCAACTATTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

91

Amino Acids

10.22

Weight (kDa)

4.64

Isoelectric Point (pI)

19.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 29 - 85 2.9e-10 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63220 AT1G63220
fragaria_vesca FvH4_7g13480 FvH4_7g13490 FvH4_7g13490 FvH4_7g13491 FvH4_7g13500 FvH4_7g13500 FvH4_7g13500
malus_domestica MD01G1048800.v1.1 MD01G1049000.v1.1
prunus_persica Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158500_v2.0.a1 Prupe.2G158700_v2.0.a1 Prupe.2G158800_v2.0.a1 Prupe.2G159000_v2.0.a1 Prupe.2G159000_v2.0.a1
pyrus_communis pycom01g07400 pycom01g07420 pycom07g12030
rosa_chinensis RchiOBHm_Chr1g0352961 RchiOBHm_Chr1g0352971 RchiOBHm_Chr1g0352981 RchiOBHm_Chr1g0353001 RchiOBHm_Chr1g0353011 RchiOBHm_Chr1g0353021 RchiOBHm_Chr1g0353061
rosa_laevigata RLG00000028293 RLG00000028297 RLG00000028298 RLG00000028299 RLG00000028300 RLG00000028301 RLG00000028302
rosa_multiflora Rmu_sc0001207.1_g000095 Rmu_sc0001207.1_g000101 Rmu_sc0001207.1_g000102 Rmu_sc0001207.1_g000103 Rmu_sc0003313.1_g000001 Rmu_sc0005122.1_g000001 Rmu_sc0005122.1_g000002 Rmu_sc0006830.1_g000001 Rmu_sc0006830.1_g000002 Rmu_sc0008840.1_g000005
rosa_roxburghii Rroxscaffold_4G00302170 Rroxscaffold_4G00302180 Rroxscaffold_4G00302190 Rroxscaffold_4G00302200 Rroxscaffold_4G00302220
rosa_rugosa Rorug01G0232400 Rorug01G0232500 Rorug01G0232700 Rorug01G0232700 Rorug01G0232800 Rorug01G0232900 Rorug01G0233000 Rorug01G0233100 Rorug01G0233200 Rorug01G0233300 Rorug01G0233400
rosa_samantha Rh1AG245700 Rh1AG245900 Rh1AG246000 Rh1AG246100 Rh1AG246200 Rh1AG246800 Rh1BG216000 Rh1BG216100 Rh1BG216200 Rh1BG216400 Rh1BG216500 Rh1BG216600 Rh1CG229500 Rh1CG229700 Rh1CG229800 Rh1CG230500 Rh1DG242100 Rh1DG242200 Rh1DG242300 Rh1DG242500 Rh1DG242600 Rh1DG242700
rosa_wichuraiana Rw0G014880 Rw0G014910 Rw0G018130 Rw1G021350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AclWI GGATC 3 cut(s) 73, 86, 154
AgsI TTSAA 2 cut(s) 106, 214
AluBI AGCT 4 cut(s) 36, 70, 87, 171
AluI AGCT 4 cut(s) 36, 70, 87, 171
AlwI GGATC 3 cut(s) 73, 86, 154
AsuHPI GGTGA 3 cut(s) 40, 172, 178
BamHI GGATCC 1 cut(s) 78
BbsI GAAGAC 2 cut(s) 113, 234
BccI CCATC 1 cut(s) 40
BfaI CTAG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 113, 234
Bse1I ACTGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 80
Bsp143I GATC 2 cut(s) 78, 146
BspACI CCGC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 3 cut(s) 73, 86, 154
BsrI ACTGG 1 cut(s) 80
BssMI GATC 2 cut(s) 78, 146
Bst4CI ACNGT 2 cut(s) 130, 184
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 2 cut(s) 81, 149
BstMBI GATC 2 cut(s) 78, 146
BstV2I GAAGAC 2 cut(s) 113, 234
BstX2I RGATCY 2 cut(s) 78, 146
BstYI RGATCY 2 cut(s) 78, 146
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 126
CviAII CATG 1 cut(s) 159
CviJI RGCY 4 cut(s) 36, 70, 87, 171
CviKI_1 RGCY 4 cut(s) 36, 70, 87, 171
DpnI GATC 2 cut(s) 80, 148
DpnII GATC 2 cut(s) 78, 146
FaeI CATG 1 cut(s) 162
FaiI YATR 2 cut(s) 90, 160
FatI CATG 1 cut(s) 158
FokI GGATG 1 cut(s) 236
FspBI CTAG 1 cut(s) 84
Hin1II CATG 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 1 cut(s) 17
HphI GGTGA 3 cut(s) 40, 172, 178
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4III ACNGT 2 cut(s) 130, 184
HpyCH4V TGCA 1 cut(s) 65
Hsp92II CATG 1 cut(s) 162
Kzo9I GATC 2 cut(s) 78, 146
LpnPI CCDG 2 cut(s) 61, 168
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 80, 148
MboI GATC 2 cut(s) 78, 146
MboII GAAGA 3 cut(s) 118, 130, 239
MflI RGATCY 2 cut(s) 78, 146
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 2 cut(s) 37, 234
MnlI CCTC 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 242
NdeII GATC 2 cut(s) 78, 146
NlaIII CATG 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 80
PsuI RGATCY 2 cut(s) 78, 146
Sau3AI GATC 2 cut(s) 78, 146
SetI ASST 6 cut(s) 30, 38, 72, 89, 173, 236
SgeI CNNG 7 cut(s) 88, 96, 125, 155, 167, 171, 187
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 130, 184
TasI AATT 1 cut(s) 60
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 180, 197, 240
TspRI CASTG 1 cut(s) 133
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.