AT2G19990

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000259
Physical Location & Seq
Reverse (-)
8629857 .. 8630688
832 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19990.1

Sequence Viewer

Length: 531 bp
ATGAATGAAATGTCGTTCTTTGGTTATAGTTTCATCGTAGTAGCATTATTCTTCGATTTAACTCAAGCCTATCGTCACACTCCCGCTCAACCGCCAAAAGCAAACGCAAACGGTGATGTCAAACCGCAAGAAACGCTCGTGGTTCACAACAAGGCCCGAGCCATGGTCGGAGTCGGACCAATGGTGTGGAACGAAACTCTTGCGACCTATGCACAGAGCTACGCACATGAACGAGCCAGAGACTGTGCCATGAAGCATTCCTTGGGACCATTCGGCGAGAATCTAGCCGCGGGTTGGGGAACGATGAGCGGTCCGGTAGCAACTGAGTATTGGATGACGGAGAAGGAAAATTACGATTATGATAGTAACACGTGTGGTGGTGATGGTGTGTGTGGACACTACACTCAGATCGTGTGGCGTGACTCGGTTCGACTTGGTTGTGCCTCCGTGAGATGTAAGAATGATGAGTATATTTGGGTGATTTGTAGCTATGATCCTCCGGGGAATTACATCGGTCAACGTCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

176

Amino Acids

19.7

Weight (kDa)

5.68

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 48 - 164 2.6e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 86, 309
AccII CGCG 1 cut(s) 290
AciI CCGC 6 cut(s) 84, 92, 125, 288, 290, 309
AclWI GGATC 1 cut(s) 488
AcvI CACGTG 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 163, 294
AflIII ACRYGT 2 cut(s) 369, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 2 cut(s) 219, 489
AluI AGCT 2 cut(s) 219, 489
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 488
AlwNI CAGNNNCTG 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 153
AspS9I GGNCC 4 cut(s) 154, 176, 266, 311
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 125, 392, 490
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 3 cut(s) 176, 266, 311
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BauI CACGAG 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 372
BccI CCATC 1 cut(s) 377
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 3 cut(s) 176, 266, 311
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 4 cut(s) 154, 176, 266, 311
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 501
BsaAI YACGTR 1 cut(s) 372
BsaJI CCNNGG 4 cut(s) 162, 261, 288, 500
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 294
BseDI CCNNGG 4 cut(s) 162, 261, 288, 500
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 163, 294
BseMII CTCAG 2 cut(s) 315, 419
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 314, 500
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 163, 294
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 156
Bsp143I GATC 2 cut(s) 408, 493
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 6 cut(s) 84, 92, 125, 288, 290, 309
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 316, 418
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 488
BsrBI CCGCTC 2 cut(s) 86, 309
BssECI CCNNGG 4 cut(s) 162, 261, 288, 500
BssMI GATC 2 cut(s) 408, 493
BssSI CACGAG 1 cut(s) 137
BssT1I CCWWGG 2 cut(s) 162, 261
Bst2BI CACGAG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 113, 245
BstBAI YACGTR 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 324, 405
BstDSI CCRYGG 2 cut(s) 162, 288
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 2 cut(s) 411, 496
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 408, 493
BstMWI GCNNNNNNNGC 2 cut(s) 133, 209
BstSCI CCNGG 1 cut(s) 499
BstUI CGCG 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 186
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 2 cut(s) 162, 288
BtsCI GGATG 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 243
Cfr13I GGNCC 4 cut(s) 154, 176, 266, 311
Cfr42I CCGCGG 1 cut(s) 291
CpoI CGGWCCG 1 cut(s) 311
CspI CGGWCCG 1 cut(s) 311
CviAII CATG 3 cut(s) 163, 227, 250
CviJI RGCY 7 cut(s) 68, 155, 161, 219, 236, 287, 489
CviKI_1 RGCY 7 cut(s) 68, 155, 161, 219, 236, 287, 489
DdeI CTNAG 2 cut(s) 324, 405
DpnI GATC 2 cut(s) 410, 495
DpnII GATC 2 cut(s) 408, 493
Eco130I CCWWGG 2 cut(s) 162, 261
Eco47I GGWCC 3 cut(s) 176, 266, 311
Eco72I CACGTG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 162, 261
ErhI CCWWGG 2 cut(s) 162, 261
FaeI CATG 3 cut(s) 166, 230, 253
FaiI YATR 9 cut(s) 27, 164, 210, 228, 251, 360, 471, 492, 526
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 162, 226, 249
FauI CCCGC 2 cut(s) 91, 283
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 314, 500
Hin1II CATG 3 cut(s) 166, 230, 253
HincII GTYRAC 1 cut(s) 518
HindII GTYRAC 1 cut(s) 518
HinfI GANTC 3 cut(s) 171, 280, 422
HpaII CCGG 2 cut(s) 314, 500
HphI GGTGA 3 cut(s) 125, 392, 490
Hpy166II GTNNAC 3 cut(s) 145, 395, 518
Hpy188I TCNGA 3 cut(s) 170, 176, 408
Hpy8I GTNNAC 3 cut(s) 145, 395, 518
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 113, 245
HpyCH4IV ACGT 2 cut(s) 371, 520
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 209
HpyF3I CTNAG 2 cut(s) 324, 405
HpySE526I ACGT 2 cut(s) 371, 520
Hsp92II CATG 3 cut(s) 166, 230, 253
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 2 cut(s) 408, 493
LpnPI CCDG 3 cut(s) 250, 327, 513
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 371, 520
MaeIII GTNAC 3 cut(s) 74, 365, 419
MalI GATC 2 cut(s) 410, 495
MbiI CCGCTC 2 cut(s) 86, 309
MboI GATC 2 cut(s) 408, 493
MboII GAAGA 1 cut(s) 43
MluCI AATT 2 cut(s) 349, 505
MlyI GAGTC 2 cut(s) 180, 416
MmeI TCCRAC 2 cut(s) 148, 154
MnlI CCTC 2 cut(s) 454, 507
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 314, 500
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 256
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 133, 209
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 162
NdeII GATC 2 cut(s) 408, 493
NlaIII CATG 3 cut(s) 166, 230, 253
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 74, 419
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 2 cut(s) 179, 416
PmaCI CACGTG 1 cut(s) 372
PmlI CACGTG 1 cut(s) 372
PpsI GAGTC 2 cut(s) 179, 416
Ppu21I YACGTR 1 cut(s) 372
PspCI CACGTG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 4 cut(s) 154, 176, 266, 311
PstNI CAGNNNCTG 1 cut(s) 243
Rsr2I CGGWCCG 1 cut(s) 311
RsrII CGGWCCG 1 cut(s) 311
SacII CCGCGG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 408, 493
Sau96I GGNCC 4 cut(s) 154, 176, 266, 311
SchI GAGTC 2 cut(s) 180, 416
ScrFI CCNGG 1 cut(s) 501
SetI ASST 5 cut(s) 209, 221, 374, 491, 523
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 3 cut(s) 176, 266, 311
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 349, 505
SsiI CCGC 6 cut(s) 84, 92, 125, 288, 290, 309
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 2 cut(s) 162, 261
TaaI ACNGT 2 cut(s) 113, 245
TaiI ACGT 2 cut(s) 374, 523
TaqI TCGA 2 cut(s) 54, 430
TaqII GACCGA 1 cut(s) 503
TasI AATT 2 cut(s) 349, 505
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseFI GTSAC 2 cut(s) 74, 419
Tsp45I GTSAC 2 cut(s) 74, 419
TspDTI ATGAA 5 cut(s) 17, 21, 22, 243, 266
TspGWI ACGGA 2 cut(s) 353, 436
VpaK11BI GGWCC 3 cut(s) 176, 266, 311
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.