Prupe.8G246500_v2.0.a1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000259
Physical Location & Seq
Forward (+)
21376354 .. 21377160
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G246500.1

Sequence Viewer

Length: 486 bp
ATGGTGTTCAACACAAAGCTTCTTTTGGCCATCTGCTGCGTCGCATTGGTCTTCACTCTTGTCTCTGCAAACATTTCCAAAGAAGAGATCGATGGCTTCCTCGAGGAGCACAACAAGGCTCGTAAAGAGGTCGGCAACAAACCCCTTAAATGGAACACGACCTTGGCCCAGTATGCCCAAGAATATGCCAACAAAAGAGTTGACGACTGCGCTATGGAGCACTCAAGAGGGCGTTGGGGTGAGAACTTGACCTCTGGTGACGGCATGACCGGCGCAGCTGGCACTAAATATTGGGTCACCGAGAAAGAGTTCTATGACCCCAAGTCCAACAAATGCGTCAAAGAGGAATGTGGTCACTACCTTGCTGTGATCTGGGGCAAAACCACCGAGGTCGGATGTGGCATTTCAAAGTGCAAGGATGGAAAGAACTACATTGTTTGCAGCTACGATCCCATGTACCAGCCCGAGGATGAGCGCCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

162

Amino Acids

18.21

Weight (kDa)

5.96

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 101
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 2 cut(s) 150, 466
AgsI TTSAA 2 cut(s) 10, 408
AhdI GACNNNNNGTC 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 3 cut(s) 19, 278, 444
AluI AGCT 3 cut(s) 19, 278, 444
Alw21I GWGCWC 2 cut(s) 111, 222
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 2 cut(s) 101, 464
AoxI GGCC 2 cut(s) 27, 165
ApeKI GCWGC 3 cut(s) 36, 275, 441
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 3 cut(s) 212, 275, 477
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 251, 269, 289
AvaI CYCGRG 2 cut(s) 101, 464
BalI TGGCCA 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 111, 222
BbvI GCAGC 3 cut(s) 23, 287, 453
BccI CCATC 3 cut(s) 38, 86, 413
BceAI ACGGC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 478
BisI GCNGC 3 cut(s) 37, 276, 442
BlsI GCNGC 3 cut(s) 38, 277, 443
BmeRI GACNNNNNGTC 1 cut(s) 322
BmeT110I CYCGRG 2 cut(s) 101, 464
BmgT120I GGNCC 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 162, 387, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 466
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 162, 387, 465
BseGI GGATG 3 cut(s) 401, 424, 475
BseLI CCNNNNNNNGG 2 cut(s) 150, 466
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 23, 287, 453
BshFI GGCC 2 cut(s) 29, 167
BshVI ATCGAT 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 111, 222
BsiHKCI CYCGRG 2 cut(s) 101, 464
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 150, 466
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 2 cut(s) 29, 167
BsoBI CYCGRG 2 cut(s) 101, 464
Bsp1286I GDGCHC 2 cut(s) 111, 222
Bsp143I GATC 3 cut(s) 87, 369, 448
BspANI GGCC 2 cut(s) 29, 167
BspDI ATCGAT 1 cut(s) 90
BspPI GGATC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 3 cut(s) 162, 387, 465
BssMI GATC 3 cut(s) 87, 369, 448
BssT1I CCWWGG 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 280
BstEII GGTNACC 1 cut(s) 295
BstF5I GGATG 3 cut(s) 401, 424, 475
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 3 cut(s) 212, 275, 477
BstKTI GATC 3 cut(s) 90, 372, 451
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 3 cut(s) 87, 369, 448
BstMWI GCNNNNNNNGC 3 cut(s) 173, 270, 279
BstPI GGTNACC 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 23, 287, 453
BstV2I GAAGAC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 2 cut(s) 29, 167
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 3 cut(s) 401, 424, 475
Cac8I GCNNGC 1 cut(s) 280
CfoI GCGC 3 cut(s) 212, 275, 477
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 2 cut(s) 28, 325
Csp6I GTAC 1 cut(s) 457
CviAII CATG 2 cut(s) 265, 454
CviJI RGCY 8 cut(s) 19, 29, 96, 119, 167, 278, 444, 463
CviKI_1 RGCY 8 cut(s) 19, 29, 96, 119, 167, 278, 444, 463
CviQI GTAC 1 cut(s) 457
DpnI GATC 3 cut(s) 89, 371, 450
DpnII GATC 3 cut(s) 87, 369, 448
DriI GACNNNNNGTC 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 101, 464
Eco91I GGTNACC 1 cut(s) 295
EcoO65I GGTNACC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 268, 457
FaiI YATR 7 cut(s) 174, 186, 215, 266, 315, 455, 481
FatI CATG 2 cut(s) 264, 453
Fnu4HI GCNGC 3 cut(s) 37, 276, 442
FokI GGATG 3 cut(s) 408, 431, 482
Fsp4HI GCNGC 3 cut(s) 37, 276, 442
FspBI CTAG 1 cut(s) 484
GlaI GCGC 3 cut(s) 211, 274, 476
GluI GCNGC 3 cut(s) 37, 276, 442
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 2 cut(s) 29, 167
HapII CCGG 1 cut(s) 270
HgaI GACGC 2 cut(s) 28, 325
HhaI GCGC 3 cut(s) 212, 275, 477
Hin1II CATG 2 cut(s) 268, 457
Hin6I GCGC 3 cut(s) 210, 273, 475
HinP1I GCGC 3 cut(s) 210, 273, 475
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 1 cut(s) 270
HphI GGTGA 3 cut(s) 251, 269, 289
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 68, 414, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 270, 279
Hsp92II CATG 2 cut(s) 268, 457
HspAI GCGC 3 cut(s) 210, 273, 475
Kzo9I GATC 3 cut(s) 87, 369, 448
LmnI GCTCC 2 cut(s) 106, 217
LpnPI CCDG 6 cut(s) 182, 240, 264, 283, 358, 473
Lsp1109I GCAGC 3 cut(s) 23, 287, 453
MaeI CTAG 1 cut(s) 484
MaeIII GTNAC 3 cut(s) 257, 295, 353
MalI GATC 3 cut(s) 89, 371, 450
MboI GATC 3 cut(s) 87, 369, 448
MboII GAAGA 2 cut(s) 43, 95
MhlI GDGCHC 2 cut(s) 111, 222
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 351, 373
MnlI CCTC 8 cut(s) 97, 110, 121, 221, 262, 337, 382, 460
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 173, 270, 279
NdeII GATC 3 cut(s) 87, 369, 448
NlaIII CATG 2 cut(s) 268, 457
NmuCI GTSAC 3 cut(s) 257, 295, 353
PaeR7I CTCGAG 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 308
PkrI GCNGC 3 cut(s) 38, 277, 443
PspEI GGTNACC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 166
PspXI VCTCGAGB 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 37, 276, 442
Sau3AI GATC 3 cut(s) 87, 369, 448
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 2 cut(s) 111, 222
SetI ASST 8 cut(s) 21, 132, 164, 254, 280, 363, 393, 446
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 101, 223
SmoI CTYRAG 2 cut(s) 101, 223
SspI AATATT 1 cut(s) 290
SspMI CTAG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 2 cut(s) 90, 102
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 3 cut(s) 257, 295, 353
TseI GCWGC 3 cut(s) 36, 275, 441
Tsp45I GTSAC 3 cut(s) 257, 295, 353
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.