Prupe.8G155000_v2.0.a1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000259
Physical Location & Seq
Reverse (-)
16654105 .. 16654953
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G155000.1

Sequence Viewer

Length: 510 bp
ATGGGGTTTAGCAACCTTTCTCTATACATATGCTCCGTTGCATTACTCTTAGCCGCTCGAGTCTCCCTAGCCCGAAAAGTCGGTTATGCTCCGAACCCCTCAAACCCCCACCAAGACTTTGTCGACGAACACAACAGAGCTCGAGCAGCAGTCGGCGTCGGTCCAATCCGATGGAACGACACTGTAGCAGCCTACGCTCAGAACTATGCCAACACAAGAATCAGAGGGTGTGACATGGAGCACTCGGGAGGGCCTTACGGCGAAAACTTGGCGGAAGGCTATGGAGAAATGACGGGCGCTCAGGCCGTGAAGTTTTGGGTGACTGAGAGACCAAACTACGACTACGGCTCCAACAAATGTGTTGGGGATGAATGTGGGCATTATACTCAGGTGGTTTGGCGGAACTCGGTTCATCTTGGTTGTGCTAGGGCTAAGTGTGACAACAATTGGGTTTTTGTCATTTGCAGCTACGATCCTCCTGGTAATTATGAGGGCGAGCGTCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

170

Amino Acids

18.72

Weight (kDa)

6.18

Isoelectric Point (pI)

23.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 123
AciI CCGC 3 cut(s) 54, 272, 400
AclWI GGATC 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 2 cut(s) 140, 468
AluI AGCT 2 cut(s) 140, 468
Alw21I GWGCWC 2 cut(s) 142, 243
Alw26I GTCTC 2 cut(s) 67, 322
AlwI GGATC 1 cut(s) 467
Ama87I CYCGRG 3 cut(s) 57, 141, 244
AoxI GGCC 2 cut(s) 251, 303
ApeKI GCWGC 3 cut(s) 146, 188, 465
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 161, 251
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 3 cut(s) 57, 141, 244
AvaII GGWCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 142, 243
BbvI GCAGC 3 cut(s) 158, 200, 477
BccI CCATC 1 cut(s) 165
BceAI ACGGC 3 cut(s) 274, 290, 361
BciT130I CCWGG 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 67, 322
BfaI CTAG 3 cut(s) 68, 426, 508
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 4 cut(s) 54, 147, 189, 466
BlsI GCNGC 4 cut(s) 55, 148, 190, 467
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 3 cut(s) 57, 141, 244
BmgT120I GGNCC 2 cut(s) 161, 251
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 322
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 332, 362
BseBI CCWGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 373
BseMII CTCAG 4 cut(s) 212, 314, 315, 401
BseXI GCAGC 3 cut(s) 158, 200, 477
BshFI GGCC 2 cut(s) 253, 305
BsiHKAI GWGCWC 2 cut(s) 142, 243
BsiHKCI CYCGRG 3 cut(s) 57, 141, 244
BslFI GGGAC 1 cut(s) 486
BsmAI GTCTC 2 cut(s) 67, 322
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 2 cut(s) 253, 305
Bso31I GGTCTC 1 cut(s) 322
BsoBI CYCGRG 3 cut(s) 57, 141, 244
Bsp1286I GDGCHC 2 cut(s) 142, 243
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 3 cut(s) 54, 272, 400
BspANI GGCC 2 cut(s) 253, 305
BspCNI CTCAG 4 cut(s) 211, 313, 316, 400
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 56
BssMI GATC 1 cut(s) 472
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 6 cut(s) 49, 198, 300, 324, 387, 432
BstF5I GGATG 1 cut(s) 373
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 1 cut(s) 475
BstMAI GTCTC 2 cut(s) 67, 322
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 2 cut(s) 146, 194
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 158, 200, 477
BstXI CCANNNNNNTGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 253, 305
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 497
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 161, 251
CseI GACGC 2 cut(s) 145, 488
CviAII CATG 1 cut(s) 235
DdeI CTNAG 6 cut(s) 49, 198, 300, 324, 387, 432
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
EciI GGCGGA 2 cut(s) 287, 415
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 140
Eco88I CYCGRG 3 cut(s) 57, 141, 244
EcoICRI GAGCTC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 238
FaiI YATR 9 cut(s) 25, 29, 31, 87, 207, 236, 282, 384, 489
FaqI GGGAC 1 cut(s) 486
FatI CATG 1 cut(s) 234
FauNDI CATATG 1 cut(s) 29
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 54, 147, 189, 466
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 4 cut(s) 54, 147, 189, 466
FspBI CTAG 3 cut(s) 68, 426, 508
GlaI GCGC 1 cut(s) 298
GluI GCNGC 4 cut(s) 54, 147, 189, 466
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 2 cut(s) 253, 305
HgaI GACGC 2 cut(s) 145, 488
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 60, 219
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 4 cut(s) 93, 170, 201, 224
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 2 cut(s) 128, 161
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 41, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 194
HpyF3I CTNAG 6 cut(s) 49, 198, 300, 324, 387, 432
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 4 cut(s) 38, 94, 238, 353
LpnPI CCDG 4 cut(s) 287, 374, 465, 492
Lsp1109I GCAGC 3 cut(s) 158, 200, 477
MaeI CTAG 3 cut(s) 68, 426, 508
MaeIII GTNAC 3 cut(s) 230, 319, 437
MalI GATC 1 cut(s) 474
MbiI CCGCTC 1 cut(s) 56
MboI GATC 1 cut(s) 472
MfeI CAATTG 1 cut(s) 445
MhlI GDGCHC 2 cut(s) 142, 243
MluCI AATT 2 cut(s) 445, 484
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 5 cut(s) 109, 218, 242, 484, 486
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 146, 194
NdeI CATATG 1 cut(s) 29
NdeII GATC 1 cut(s) 472
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 3 cut(s) 230, 319, 437
PaeR7I CTCGAG 2 cut(s) 57, 141
PfeI GAWTC 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 4 cut(s) 55, 148, 190, 467
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 161, 251
PspXI VCTCGAGB 2 cut(s) 57, 141
PsyI GACNNNGTC 1 cut(s) 119
SacI GAGCTC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 122
SatI GCNGC 4 cut(s) 54, 147, 189, 466
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 2 cut(s) 161, 251
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 2 cut(s) 142, 243
SetI ASST 4 cut(s) 18, 142, 393, 470
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 2 cut(s) 57, 141
SinI GGWCC 1 cut(s) 161
SlaI CTCGAG 2 cut(s) 57, 141
SmlI CTYRAG 2 cut(s) 57, 141
SmoI CTYRAG 2 cut(s) 57, 141
Sse9I AATT 2 cut(s) 445, 484
SsiI CCGC 3 cut(s) 54, 272, 400
SspMI CTAG 3 cut(s) 68, 426, 508
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 478
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 3 cut(s) 58, 123, 142
TaqII GACCGA 1 cut(s) 149
TasI AATT 2 cut(s) 445, 484
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 219
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 3 cut(s) 230, 319, 437
TseI GCWGC 3 cut(s) 146, 188, 465
Tsp45I GTSAC 3 cut(s) 230, 319, 437
TspDTI ATGAA 2 cut(s) 384, 401
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 161
XhoI CTCGAG 2 cut(s) 57, 141
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 3 cut(s) 68, 426, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.