Rorug05G0527300

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000259
Physical Location & Seq
Reverse (-)
71596764 .. 71598374
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0527300.1

Sequence Viewer

Length: 474 bp
ATGGAGATCCATCACCTGAAGCACCACAACACCTACGTCGACAACTTCAACAAGGCTCTCGACAACCTCGAACAGGCCATGGATACCGGCGACTCCTCCACCGTCGTCAAGTTGCAGAGCGCCCTTAAATTCAACGGCGGAGGTCATATAAACCACTCTATTTTCTGGAAATGTCTGGCCCCGGATACGGAAGGAGGAGGTGAGCCTCCAAAGGGTTCATTGGGATGGGAAATTGACAATCATACGTGGCTTGCTCTTGACAAAGATCAGAAGAAGCTTTCCGTTGAATGCACAGCTAATCAGGATCCATTGATAATTAAAGGAGCAAATTATGTTCCTCTGCTTGGGATAGATGTGTGGGAGCATGCTTACTACTTGCAGTACAAAAACGTGAGGCCAGACTATCTGAAGTACATATGGGAGGTTGTTAACTGGAAATATGCAAGTGAAGTGTATGAGAAAGAGTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

5.54

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Fe_N PF00081 1 - 60 2.6e-20 Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C PF02777 81 - 150 8.9e-24 Iron/manganese superoxide dismutases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 39
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 299, 312
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 2 cut(s) 38, 428
AfaI GTAC 2 cut(s) 383, 413
AfiI CCNNNNNNNGG 4 cut(s) 73, 187, 212, 344
AgsI TTSAA 3 cut(s) 49, 133, 287
AluBI AGCT 2 cut(s) 277, 296
AluI AGCT 2 cut(s) 277, 296
AlwI GGATC 2 cut(s) 299, 312
AoxI GGCC 3 cut(s) 75, 177, 395
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 5, 212
BamHI GGATCC 1 cut(s) 304
BccI CCATC 2 cut(s) 18, 219
BceAI ACGGC 1 cut(s) 151
BciVI GTATCC 2 cut(s) 76, 178
BcnI CCSGG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 123
BfuI GTATCC 2 cut(s) 76, 178
Bme1390I CCNGG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 180, 306
BmrFI CCNGG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 78, 180
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 187, 212, 344
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 78, 180
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 4 cut(s) 73, 187, 212, 344
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 2 cut(s) 85, 210
BshFI GGCC 3 cut(s) 77, 179, 397
BsiSI CCGG 2 cut(s) 87, 182
BslI CCNNNNNNNGG 4 cut(s) 73, 187, 212, 344
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 3 cut(s) 77, 179, 397
Bsp143I GATC 3 cut(s) 6, 265, 304
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 1 cut(s) 138
BspANI GGCC 3 cut(s) 77, 179, 397
BspLI GGNNCC 2 cut(s) 180, 306
BspPI GGATC 2 cut(s) 299, 312
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 78, 180
BssMI GATC 3 cut(s) 6, 265, 304
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 252, 366
BstDSI CCRYGG 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 9, 268, 307
BstMBI GATC 3 cut(s) 6, 265, 304
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 180
BstX2I RGATCY 2 cut(s) 6, 304
BstYI RGATCY 2 cut(s) 6, 304
BsuI GTATCC 2 cut(s) 76, 178
BsuRI GGCC 3 cut(s) 77, 179, 397
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 252, 366
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 382, 412
CviAII CATG 2 cut(s) 79, 365
CviJI RGCY 8 cut(s) 56, 77, 179, 205, 250, 277, 296, 397
CviKI_1 RGCY 8 cut(s) 56, 77, 179, 205, 250, 277, 296, 397
CviQI GTAC 2 cut(s) 382, 412
DpnI GATC 3 cut(s) 8, 267, 306
DpnII GATC 3 cut(s) 6, 265, 304
EciI GGCGGA 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 38, 428
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 82, 368
FatI CATG 2 cut(s) 78, 364
FauNDI CATATG 1 cut(s) 416
FblI GTMKAC 1 cut(s) 39
FokI GGATG 1 cut(s) 237
GlaI GCGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 3 cut(s) 77, 179, 397
HapII CCGG 2 cut(s) 87, 182
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 82, 368
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 2 cut(s) 40, 430
HindII GTYRAC 2 cut(s) 40, 430
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 92
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 2 cut(s) 87, 182
HphI GGTGA 2 cut(s) 5, 212
Hpy166II GTNNAC 2 cut(s) 40, 430
Hpy188I TCNGA 2 cut(s) 270, 408
Hpy188III TCNNGA 4 cut(s) 59, 166, 257, 302
Hpy8I GTNNAC 2 cut(s) 40, 430
Hpy99I CGWCG 2 cut(s) 41, 107
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 3 cut(s) 36, 245, 390
HpyCH4V TGCA 4 cut(s) 115, 291, 379, 443
HpySE526I ACGT 3 cut(s) 36, 245, 390
Hsp92II CATG 2 cut(s) 82, 368
HspAI GCGC 1 cut(s) 120
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 3 cut(s) 6, 265, 304
LmnI GCTCC 2 cut(s) 323, 361
LpnPI CCDG 9 cut(s) 29, 59, 100, 151, 161, 195, 287, 411, 418
MaeII ACGT 3 cut(s) 36, 245, 390
MalI GATC 3 cut(s) 8, 267, 306
MboI GATC 3 cut(s) 6, 265, 304
MboII GAAGA 1 cut(s) 283
MflI RGATCY 2 cut(s) 6, 304
MluCI AATT 4 cut(s) 128, 231, 315, 328
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 9 cut(s) 77, 106, 134, 188, 191, 216, 348, 387, 415
MseI TTAA 3 cut(s) 126, 318, 429
MslI CAYNNNNRTG 1 cut(s) 223
MspI CCGG 2 cut(s) 87, 182
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 78
NdeI CATATG 1 cut(s) 416
NdeII GATC 3 cut(s) 6, 265, 304
NlaIII CATG 2 cut(s) 82, 368
NlaIV GGNNCC 2 cut(s) 180, 306
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 180, 306
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 2 cut(s) 6, 304
RsaI GTAC 2 cut(s) 383, 413
RsaNI GTAC 2 cut(s) 382, 412
RseI CAYNNNNRTG 1 cut(s) 223
SalI GTCGAC 1 cut(s) 38
SaqAI TTAA 3 cut(s) 126, 318, 429
Sau3AI GATC 3 cut(s) 6, 265, 304
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 223
SphI GCATGC 1 cut(s) 368
Sse9I AATT 4 cut(s) 128, 231, 315, 328
SsiI CCGC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 3 cut(s) 39, 248, 393
TaqI TCGA 3 cut(s) 39, 60, 69
TasI AATT 4 cut(s) 128, 231, 315, 328
TatI WGTACW 2 cut(s) 381, 411
Tru1I TTAA 3 cut(s) 126, 318, 429
Tru9I TTAA 3 cut(s) 126, 318, 429
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 2 cut(s) 203, 271
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.