RLG00000010111

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000259
Physical Location & Seq
Reverse (-)
63123792 .. 63125125
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010111

Sequence Viewer

Length: 708 bp
ATGGGGTTCAACAAACAAAACTTAATAGCTGTATGCTCCACAGCTTTGATCCTAATTACTTTTGTCCCTCTAGCGAGTACAGTCGAAGACGACAGTGGCTTCCTCAAAGCACACAATGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCATTGGAATAAAACCATAGCTAAGTATGCGCAAAATTATGCCAATAAAAGATCTGTGGACTGTGCAATGGAGCATTCAGATGGTCCTTATGCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACAGAGAAAGCCGAATACGACTACAACACAAACAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTCAGGGTTTGTACGGAATTAGAATTAGATTGCTGATTTCGCAAGTACGAGTAGGTCGTGAACACTTTTTAACTTTGGATTATCATACTGATTGCATTGGTGCGAGTTCTTCTGGTGCTTGGATTTTTGTTAATGGCACAGAGTCAGTTGTTGGTAAAAGAAGGAAGAGGTTAAGTGAGATGTCAGCCTATCCAAAGAAACTTCGATTGAGCCTTGCAATGGGCATAAAGAATCTTGACATTGAAAACATAAAGCCGATCACTGTGGCTTTGGCGGCGACTGTTAAGAATGATAAGATAGGTAAGTCGATGGATAGTCAAAATAGGTGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

236

Amino Acids

26.18

Weight (kDa)

8.81

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 128 6e-12 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 180
AciI CCGC 3 cut(s) 143, 364, 647
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 701
AfaI GTAC 5 cut(s) 79, 293, 340, 386, 420
AfiI CCNNNNNNNGG 1 cut(s) 592
AgeI ACCGGT 2 cut(s) 272, 341
AgsI TTSAA 2 cut(s) 10, 617
AluBI AGCT 3 cut(s) 29, 44, 170
AluI AGCT 3 cut(s) 29, 44, 170
Alw21I GWGCWC 2 cut(s) 135, 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 701
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 281
AsiGI ACCGGT 2 cut(s) 272, 341
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 233, 344
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 2 cut(s) 233, 344
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BalI TGGCCA 1 cut(s) 703
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 2 cut(s) 135, 302
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 224, 676
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 200
BisI GCNGC 3 cut(s) 282, 364, 648
BlsI GCNGC 3 cut(s) 283, 365, 649
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 233, 344
BmgT120I GGNCC 2 cut(s) 233, 344
BpiI GAAGAC 2 cut(s) 93, 360
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 272, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse118I RCCGGY 2 cut(s) 272, 341
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 3 cut(s) 222, 249, 597
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMI GCAATG 3 cut(s) 222, 249, 597
BseMII CTCAG 3 cut(s) 234, 339, 389
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 703
BshTI ACCGGT 2 cut(s) 272, 341
BsiHKAI GWGCWC 2 cut(s) 135, 302
BsiSI CCGG 2 cut(s) 273, 342
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 703
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 135, 302
Bsp143I GATC 3 cut(s) 48, 200, 630
BspACI CCGC 3 cut(s) 143, 364, 647
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 3 cut(s) 235, 340, 388
BspPI GGATC 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 222, 249, 597
BsrFI RCCGGY 2 cut(s) 272, 341
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 3 cut(s) 48, 200, 630
Bst4CI ACNGT 7 cut(s) 82, 95, 137, 212, 359, 637, 655
Bst6I CTCTTC 1 cut(s) 533
BstDEI CTNAG 4 cut(s) 171, 243, 348, 375
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 3 cut(s) 51, 203, 633
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 48, 200, 630
BstMWI GCNNNNNNNGC 3 cut(s) 176, 412, 647
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 1 cut(s) 703
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 3 cut(s) 100, 146, 633
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 2 cut(s) 233, 344
Csp6I GTAC 5 cut(s) 78, 292, 339, 385, 419
CspAI ACCGGT 2 cut(s) 272, 341
CspCI CAANNNNNGTGG 1 cut(s) 680
CviQI GTAC 5 cut(s) 78, 292, 339, 385, 419
DdeI CTNAG 4 cut(s) 171, 243, 348, 375
DpnI GATC 3 cut(s) 50, 202, 632
DpnII GATC 3 cut(s) 48, 200, 630
EaeI YGGCCR 1 cut(s) 701
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 233, 344
Eco81I CCTNAGG 1 cut(s) 348
FaqI GGGAC 1 cut(s) 50
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 282, 364, 648
Fsp4HI GCNGC 3 cut(s) 282, 364, 648
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 1 cut(s) 180
GluI GCNGC 3 cut(s) 282, 364, 648
HaeIII GGCC 1 cut(s) 703
HapII CCGG 2 cut(s) 273, 342
HhaI GCGC 1 cut(s) 181
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 3 cut(s) 121, 515, 604
HpaII CCGG 2 cut(s) 273, 342
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 208, 300, 434
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 347, 431, 608
Hpy8I GTNNAC 3 cut(s) 208, 300, 434
HpyAV CCTTC 1 cut(s) 528
HpyCH4III ACNGT 7 cut(s) 82, 95, 137, 212, 359, 637, 655
HpyCH4V TGCA 5 cut(s) 151, 215, 300, 468, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 412, 647
HpyF3I CTNAG 4 cut(s) 171, 243, 348, 375
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 3 cut(s) 48, 200, 630
LmnI GCTCC 2 cut(s) 41, 220
LpnPI CCDG 6 cut(s) 280, 286, 355, 360, 362, 471
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 71
MalI GATC 3 cut(s) 50, 202, 632
MboI GATC 3 cut(s) 48, 200, 630
MboII GAAGA 4 cut(s) 98, 365, 474, 550
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 135, 302
MlsI TGGCCA 1 cut(s) 703
MluCI AATT 4 cut(s) 54, 184, 390, 396
MluNI TGGCCA 1 cut(s) 703
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 4 cut(s) 78, 113, 343, 534
Mox20I TGGCCA 1 cut(s) 703
MscI TGGCCA 1 cut(s) 703
MseI TTAA 5 cut(s) 23, 443, 504, 545, 657
MslI CAYNNNNRTG 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 703
MspI CCGG 2 cut(s) 273, 342
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 176, 412, 647
NdeII GATC 3 cut(s) 48, 200, 630
NsbI TGCGCA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 427
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 121, 604
PinAI ACCGGT 2 cut(s) 272, 341
PkrI GCNGC 3 cut(s) 283, 365, 649
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PspPI GGNCC 2 cut(s) 233, 344
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 5 cut(s) 79, 293, 340, 386, 420
RsaNI GTAC 5 cut(s) 78, 292, 339, 385, 419
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 5 cut(s) 23, 443, 504, 545, 657
SatI GCNGC 3 cut(s) 282, 364, 648
Sau3AI GATC 3 cut(s) 48, 200, 630
Sau96I GGNCC 2 cut(s) 233, 344
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 524
SduI GDGCHC 2 cut(s) 135, 302
SetI ASST 7 cut(s) 31, 46, 172, 430, 545, 676, 701
SinI GGWCC 2 cut(s) 233, 344
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 4 cut(s) 54, 184, 390, 396
SsiI CCGC 3 cut(s) 143, 364, 647
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 7 cut(s) 82, 95, 137, 212, 359, 637, 655
TaqI TCGA 3 cut(s) 84, 577, 680
TasI AATT 4 cut(s) 54, 184, 390, 396
TatI WGTACW 2 cut(s) 77, 291
TauI GCSGC 2 cut(s) 366, 650
TfiI GAWTC 2 cut(s) 121, 604
Tru1I TTAA 5 cut(s) 23, 443, 504, 545, 657
Tru9I TTAA 5 cut(s) 23, 443, 504, 545, 657
TscAI CASTG 3 cut(s) 100, 153, 640
TseI GCWGC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 3 cut(s) 100, 153, 640
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 233, 344
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.