Rh6CG035600

SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
3363750 .. 3364221
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG035600.1

Sequence Viewer

Length: 294 bp
ATGGAGCATTGGATGGGTCCTTATCCAGAGAGCATCGCGAGTGGTTTGGATATGACAGGTGAAGCAGCGACAAAATACTGGTGCATAGAGAAAGCCGAATACGACTACAACTCGAGTAATTGTACCAGTCCAGAGGAAGACGGTTACCGCCACTACTCTCAGATAGTTTGGAGGAAGACGGTTACCGCCACAACAACCCAACTTGGTTGTGCGAAGGCCAAGTGTAAAAATGGCGACATGTTTGTAACCTGCAACTATGATCCTTCGGGAAATTGGGACGAGCGTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

11.08

Weight (kDa)

4.85

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 2 - 86 4.1e-09 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 148, 186
AclWI GGATC 1 cut(s) 254
AfaI GTAC 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 237
AlwI GGATC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 144, 182
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 7
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 42
BoxI GACNNNNGTC 1 cut(s) 282
BpiI GAAGAC 2 cut(s) 144, 182
Bse1I ACTGG 2 cut(s) 83, 126
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 83, 126
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 112
Bsp143I GATC 1 cut(s) 259
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 2 cut(s) 148, 186
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 254
BsrI ACTGG 2 cut(s) 83, 126
BssMI GATC 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 143, 181
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 2 cut(s) 143, 181
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 241
BstPAI GACNNNNGTC 1 cut(s) 282
BstPI GGTNACC 2 cut(s) 143, 181
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 2 cut(s) 144, 182
BsuRI GGCC 1 cut(s) 218
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 18
BtuMI TCGCGA 1 cut(s) 38
BveI ACCTGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 238
CviJI RGCY 2 cut(s) 95, 218
CviKI_1 RGCY 2 cut(s) 95, 218
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 112
Eco91I GGTNACC 2 cut(s) 143, 181
EcoO109I RGGNCCY 1 cut(s) 17
EcoO65I GGTNACC 2 cut(s) 143, 181
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 53, 86, 239, 258
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 218
HgaI GACGC 1 cut(s) 272
Hin1II CATG 1 cut(s) 241
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 4 cut(s) 26, 37, 131, 267
HpyAV CCTTC 2 cut(s) 208, 273
HpyCH4III ACNGT 2 cut(s) 143, 181
HpyCH4V TGCA 2 cut(s) 84, 252
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 39, 42, 64, 139, 144, 262
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 143, 181, 244
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 2 cut(s) 149, 187
MluCI AATT 2 cut(s) 118, 271
MnlI CCTC 2 cut(s) 127, 165
MvnI CGCG 1 cut(s) 38
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 18
NruI TCGCGA 1 cut(s) 38
NspI RCATGY 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 112
PciI ACATGT 1 cut(s) 237
PkrI GCNGC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 17
PscI ACATGT 1 cut(s) 237
PshAI GACNNNNGTC 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 17
PspEI GGTNACC 2 cut(s) 143, 181
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 112
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 17
SetI ASST 2 cut(s) 61, 251
SfaNI GCATC 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 112
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 118, 271
SsiI CCGC 2 cut(s) 148, 186
TaaI ACNGT 2 cut(s) 143, 181
TaqI TCGA 1 cut(s) 113
TasI AATT 2 cut(s) 118, 271
TseI GCWGC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.