Rmu_sc0003092.1_g000050

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003092.1
OG0000259
Physical Location & Seq
Reverse (-)
113917 .. 115237
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003092.1_g000050.1.cds

Sequence Viewer

Length: 708 bp
atggggttcaacaaacaaaacttaatagccatatgctccgcagctttgatcctaattacttatgtccctctagcaagtacagtcgaagacgacagtggcttcctcaaagcacacaatgagattcgcaaagagcacggtctcccgccactgcaatggaataaaaccttagctgagtatgcacaaaattatgccaataaaagatctggggactgcgcaatggagcattcggatgctccttattctgagaacattgcgagtggtttgggtatgaccggtgaagcagcgacaaagtactggtgcaccgagaaagccgaatacgactacaacacaaataaatgtatcggtcctgaggaagacggttgccgccactacactattatagttacgaggataacaacccaacttggttgtgcaagggccaagtgcaaaaatggcgatatgtttgtatcctgcaactatgatccttctggagagccagaccagcgggccttcgtgcagcaaaaaccactttggcaggtgactatacgagaactgaaggagattgcgacagcttccacagagtcggtttttggtaaaagaaggaagaggttgagtgagatgtcagcctctccaaagacacttcgattgagccttgcaatggccatgaagaatcttgacactgaaaacataaggctgatcacgcactgtggctccggcgaggaccgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

235

Amino Acids

26.21

Weight (kDa)

6.94

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
Acc16I TGCGCA 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 505
AciI CCGC 4 cut(s) 39, 143, 364, 484
AclWI GGATC 2 cut(s) 43, 455
AcoI YGGCCR 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 2 cut(s) 79, 293
AfiI CCNNNNNNNGG 1 cut(s) 637
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 3 cut(s) 44, 170, 551
AluI AGCT 3 cut(s) 44, 170, 551
Alw21I GWGCWC 2 cut(s) 135, 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 43, 455
AoxI GGCC 3 cut(s) 417, 486, 639
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 3 cut(s) 41, 281, 496
AsiGI ACCGGT 1 cut(s) 272
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 4 cut(s) 344, 417, 486, 700
AsuHPI GGTGA 2 cut(s) 287, 529
AvaII GGWCC 2 cut(s) 344, 700
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 641
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 2 cut(s) 135, 302
BbvI GCAGC 3 cut(s) 53, 293, 508
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 505
BfuI GTATCC 1 cut(s) 457
BglII AGATCT 1 cut(s) 200
BisI GCNGC 4 cut(s) 42, 282, 364, 497
BlsI GCNGC 4 cut(s) 43, 283, 365, 498
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 344, 700
BmgT120I GGNCC 4 cut(s) 344, 417, 486, 700
BmiI GGNNCC 1 cut(s) 691
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 2 cut(s) 93, 360
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 4 cut(s) 158, 222, 249, 642
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 4 cut(s) 158, 222, 249, 642
BseMII CTCAG 3 cut(s) 162, 234, 339
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 3 cut(s) 53, 293, 508
BsgI GTGCAG 1 cut(s) 515
BshFI GGCC 3 cut(s) 419, 488, 641
BshTI ACCGGT 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 135, 302
BsiSI CCGG 2 cut(s) 273, 693
BslFI GGGAC 2 cut(s) 50, 221
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 50, 221
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 419, 488, 641
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 135, 302
Bsp143I GATC 4 cut(s) 48, 200, 460, 675
BspACI CCGC 4 cut(s) 39, 143, 364, 484
BspANI GGCC 3 cut(s) 419, 488, 641
BspCNI CTCAG 3 cut(s) 163, 235, 340
BspLI GGNNCC 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 2 cut(s) 43, 455
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 4 cut(s) 158, 222, 249, 642
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 272
BssMI GATC 4 cut(s) 48, 200, 460, 675
Bst4CI ACNGT 6 cut(s) 82, 95, 137, 359, 686, 704
Bst6I CTCTTC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 4 cut(s) 166, 171, 243, 348
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 4 cut(s) 51, 203, 463, 678
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 4 cut(s) 48, 200, 460, 675
BstMWI GCNNNNNNNGC 4 cut(s) 176, 432, 481, 679
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 53, 293, 508
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 3 cut(s) 419, 488, 641
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 4 cut(s) 100, 146, 657, 682
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 4 cut(s) 344, 417, 486, 700
Csp6I GTAC 2 cut(s) 78, 292
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 1 cut(s) 643
CviQI GTAC 2 cut(s) 78, 292
DdeI CTNAG 4 cut(s) 166, 171, 243, 348
DpnI GATC 4 cut(s) 50, 202, 462, 677
DpnII GATC 4 cut(s) 48, 200, 460, 675
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 344, 700
Eco57I CTGAAG 1 cut(s) 554
Eco81I CCTNAGG 1 cut(s) 348
FaeI CATG 1 cut(s) 646
FaqI GGGAC 2 cut(s) 50, 221
FatI CATG 1 cut(s) 642
FauI CCCGC 2 cut(s) 150, 477
FauNDI CATATG 1 cut(s) 32
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 4 cut(s) 42, 282, 364, 497
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 4 cut(s) 42, 282, 364, 497
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 1 cut(s) 214
GlaI GCGC 1 cut(s) 214
GluI GCNGC 4 cut(s) 42, 282, 364, 497
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 3 cut(s) 419, 488, 641
HapII CCGG 2 cut(s) 273, 693
HhaI GCGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 646
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 3 cut(s) 121, 560, 649
HpaII CCGG 2 cut(s) 273, 693
HphI GGTGA 2 cut(s) 287, 529
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 2 cut(s) 229, 244
Hpy188III TCNNGA 3 cut(s) 347, 468, 653
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 4 cut(s) 474, 499, 529, 573
HpyCH4III ACNGT 6 cut(s) 82, 95, 137, 359, 686, 704
HpyCH4V TGCA 8 cut(s) 151, 179, 300, 413, 426, 453, 496, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 432, 481, 679
HpyF3I CTNAG 4 cut(s) 166, 171, 243, 348
Hsp92II CATG 1 cut(s) 646
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 4 cut(s) 48, 200, 460, 675
LmnI GCTCC 4 cut(s) 41, 220, 238, 695
LpnPI CCDG 9 cut(s) 189, 280, 286, 360, 453, 463, 489, 494, 500
Lsp1109I GCAGC 3 cut(s) 53, 293, 508
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 382, 517
MalI GATC 4 cut(s) 50, 202, 462, 677
MboI GATC 4 cut(s) 48, 200, 460, 675
MboII GAAGA 4 cut(s) 98, 365, 595, 658
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 135, 302
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 2 cut(s) 54, 184
MluNI TGGCCA 1 cut(s) 641
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 7 cut(s) 78, 113, 343, 381, 579, 616, 691
Mox20I TGGCCA 1 cut(s) 641
MscI TGGCCA 1 cut(s) 641
MseI TTAA 2 cut(s) 23, 706
MslI CAYNNNNRTG 2 cut(s) 151, 228
Msp20I TGGCCA 1 cut(s) 641
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 2 cut(s) 273, 693
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 4 cut(s) 176, 432, 481, 679
NdeI CATATG 1 cut(s) 32
NdeII GATC 4 cut(s) 48, 200, 460, 675
NlaIII CATG 1 cut(s) 646
NlaIV GGNNCC 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 517
NsbI TGCGCA 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 505
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 121, 649
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 4 cut(s) 43, 283, 365, 498
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 691
PspPI GGNCC 4 cut(s) 344, 417, 486, 700
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 79, 293
RsaNI GTAC 2 cut(s) 78, 292
RseI CAYNNNNRTG 2 cut(s) 151, 228
SaqAI TTAA 2 cut(s) 23, 706
SatI GCNGC 4 cut(s) 42, 282, 364, 497
Sau3AI GATC 4 cut(s) 48, 200, 460, 675
Sau96I GGNCC 4 cut(s) 344, 417, 486, 700
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 2 cut(s) 135, 302
SetI ASST 6 cut(s) 46, 167, 172, 519, 553, 590
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 2 cut(s) 344, 700
SmiMI CAYNNNNRTG 2 cut(s) 151, 228
Sse9I AATT 2 cut(s) 54, 184
SsiI CCGC 4 cut(s) 39, 143, 364, 484
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 6 cut(s) 82, 95, 137, 359, 686, 704
TaqI TCGA 2 cut(s) 84, 622
TaqII GACCGA 1 cut(s) 332
TasI AATT 2 cut(s) 54, 184
TatI WGTACW 2 cut(s) 77, 291
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 121, 649
Tru1I TTAA 2 cut(s) 23, 706
Tru9I TTAA 2 cut(s) 23, 706
TscAI CASTG 4 cut(s) 100, 153, 664, 689
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 3 cut(s) 41, 281, 496
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 1 cut(s) 659
TspRI CASTG 4 cut(s) 100, 153, 664, 689
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 344, 700
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.