Rroxscaffold_7G00213940

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000259
Physical Location & Seq
Reverse (-)
64391476 .. 64392826
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213940.1

Sequence Viewer

Length: 732 bp
ATGGGGTTCAACAAACAAAACTTAATAGCCGTGTGCTCCACAGCTTTGATCCTAATTACTTATGTCCCTCTAGCAAGTACAGTTGAAGACGACAGTGGCTTCCTCAAAGCACACAATGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCATTGGAATAAAACCATAGCTGAGTATGCGCAAAATTATGCCAATAAAAGATCTGTAGACTGCGCAATGGAGCATTCAATGGGTCCTTATTCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACAGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTCAGGTTCAAGTAGATCGTGAACACTTTTTAATTTTGGATTATCATACTGATTGCATTGGTGCAAGTTCCTCTGGTGCCCGGATTTTTGTTAATAGGCAGAACCCGGTTTTAGAGGCACAGGTGACTATACGAGAACAAAAGGAGATTGCAACAGCTTCCGCAGAGTCAGTTGTTGGTAAAAGAAGGAAGAGGTTGAGTGAGATGTTAGCCTCTCCAAAGAAACTTCGATTGAGCCTTGCAATTGGCATGAAGAATCCTGACATTGAAAACATAAGGCTAATCACTGTGGCTTCAGCCAGGACTGTTAAGAATGATAAGATAGTTAAGTCGATGGATAGTCAAAATAAGTGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

243

Amino Acids

27.18

Weight (kDa)

8.15

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 127 1.4e-11 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 180, 214
AccB1I GGYRCC 1 cut(s) 449
AccI GTMKAC 1 cut(s) 207
AciI CCGC 3 cut(s) 143, 364, 534
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 725
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 3 cut(s) 79, 293, 340
AgeI ACCGGT 2 cut(s) 272, 341
AgsI TTSAA 5 cut(s) 10, 86, 228, 383, 641
AjnI CCWGG 1 cut(s) 671
AluBI AGCT 3 cut(s) 44, 170, 530
AluI AGCT 3 cut(s) 44, 170, 530
Alw21I GWGCWC 3 cut(s) 38, 135, 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 725
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 281
AsiGI ACCGGT 2 cut(s) 272, 341
AspLEI GCGC 2 cut(s) 181, 215
AspS9I GGNCC 2 cut(s) 233, 344
AsuC2I CCSGG 2 cut(s) 454, 479
AsuHPI GGTGA 2 cut(s) 287, 508
AvaII GGWCC 2 cut(s) 233, 344
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 2 cut(s) 302, 454
BalI TGGCCA 1 cut(s) 727
BanI GGYRCC 1 cut(s) 449
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 3 cut(s) 38, 135, 302
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 700
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 673
BcnI CCSGG 2 cut(s) 454, 479
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 204
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 282, 364
BlsI GCNGC 2 cut(s) 283, 365
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 3 cut(s) 454, 479, 673
Bme18I GGWCC 2 cut(s) 233, 344
BmgT120I GGNCC 2 cut(s) 233, 344
BmiI GGNNCC 2 cut(s) 234, 451
BmrFI CCNGG 3 cut(s) 454, 479, 673
BpiI GAAGAC 2 cut(s) 93, 360
BpuMI CCSGG 2 cut(s) 454, 479
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 272, 341
Bse118I RCCGGY 2 cut(s) 272, 341
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 222, 249
BseBI CCWGG 1 cut(s) 673
BseMI GCAATG 2 cut(s) 222, 249
BseMII CTCAG 4 cut(s) 162, 234, 339, 389
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 2 cut(s) 302, 454
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 727
BshNI GGYRCC 1 cut(s) 449
BshTI ACCGGT 2 cut(s) 272, 341
BsiHKAI GWGCWC 3 cut(s) 38, 135, 302
BsiSI CCGG 4 cut(s) 273, 342, 454, 479
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 727
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 38, 135, 302, 454
Bsp143I GATC 3 cut(s) 48, 200, 388
BspACI CCGC 3 cut(s) 143, 364, 534
BspANI GGCC 1 cut(s) 727
BspCNI CTCAG 4 cut(s) 163, 235, 340, 388
BspLI GGNNCC 2 cut(s) 234, 451
BspPI GGATC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 222, 249
BsrFI RCCGGY 2 cut(s) 272, 341
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 3 cut(s) 48, 200, 388
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 6 cut(s) 82, 95, 137, 359, 661, 679
Bst6I CTCTTC 1 cut(s) 557
BstDEI CTNAG 4 cut(s) 171, 243, 348, 375
BstHHI GCGC 2 cut(s) 181, 215
BstKTI GATC 3 cut(s) 51, 203, 391
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 48, 200, 388
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 452, 477, 671
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 2 cut(s) 302, 454
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 1 cut(s) 727
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 3 cut(s) 100, 146, 657
CfoI GCGC 2 cut(s) 181, 215
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 2 cut(s) 233, 344
Csp6I GTAC 3 cut(s) 78, 292, 339
CspAI ACCGGT 2 cut(s) 272, 341
CspCI CAANNNNNGTGG 1 cut(s) 704
CviAII CATG 1 cut(s) 622
CviQI GTAC 3 cut(s) 78, 292, 339
DdeI CTNAG 4 cut(s) 171, 243, 348, 375
DpnI GATC 3 cut(s) 50, 202, 390
DpnII GATC 3 cut(s) 48, 200, 388
EaeI YGGCCR 1 cut(s) 725
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 233, 344
Eco57I CTGAAG 1 cut(s) 651
Eco81I CCTNAGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 671
FaeI CATG 1 cut(s) 625
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 621
FauI CCCGC 1 cut(s) 150
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 282, 364
Fsp4HI GCNGC 2 cut(s) 282, 364
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 2 cut(s) 180, 214
GlaI GCGC 2 cut(s) 180, 214
GluI GCNGC 2 cut(s) 282, 364
HaeIII GGCC 1 cut(s) 727
HapII CCGG 4 cut(s) 273, 342, 454, 479
HhaI GCGC 2 cut(s) 181, 215
Hin1II CATG 1 cut(s) 625
Hin6I GCGC 2 cut(s) 179, 213
HinP1I GCGC 2 cut(s) 179, 213
HinfI GANTC 3 cut(s) 121, 539, 628
HpaII CCGG 4 cut(s) 273, 342, 454, 479
HphI GGTGA 2 cut(s) 287, 508
Hpy166II GTNNAC 3 cut(s) 208, 300, 395
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 347, 392, 632
Hpy8I GTNNAC 3 cut(s) 208, 300, 395
HpyAV CCTTC 1 cut(s) 552
HpyCH4III ACNGT 6 cut(s) 82, 95, 137, 359, 661, 679
HpyCH4V TGCA 6 cut(s) 151, 300, 429, 437, 524, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 4 cut(s) 171, 243, 348, 375
Hsp92II CATG 1 cut(s) 625
HspAI GCGC 2 cut(s) 179, 213
Kzo9I GATC 3 cut(s) 48, 200, 388
LmnI GCTCC 2 cut(s) 41, 220
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 496
MalI GATC 3 cut(s) 50, 202, 390
MboI GATC 3 cut(s) 48, 200, 388
MboII GAAGA 4 cut(s) 98, 365, 574, 637
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 4 cut(s) 38, 135, 302, 454
MlsI TGGCCA 1 cut(s) 727
MluCI AATT 4 cut(s) 54, 184, 405, 615
MluNI TGGCCA 1 cut(s) 727
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 7 cut(s) 78, 113, 343, 454, 481, 558, 595
Mox20I TGGCCA 1 cut(s) 727
MscI TGGCCA 1 cut(s) 727
MseI TTAA 5 cut(s) 23, 404, 465, 681, 699
Msp20I TGGCCA 1 cut(s) 727
MspI CCGG 4 cut(s) 273, 342, 454, 479
MspR9I CCNGG 3 cut(s) 454, 479, 673
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 673
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 2 cut(s) 454, 479
NdeII GATC 3 cut(s) 48, 200, 388
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 2 cut(s) 234, 451
NmuCI GTSAC 1 cut(s) 496
NsbI TGCGCA 2 cut(s) 180, 214
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 121, 628
PinAI ACCGGT 2 cut(s) 272, 341
PkrI GCNGC 2 cut(s) 283, 365
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
PpuMI RGGWCCY 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 671
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 2 cut(s) 234, 451
PspPI GGNCC 2 cut(s) 233, 344
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 3 cut(s) 79, 293, 340
RsaNI GTAC 3 cut(s) 78, 292, 339
SaqAI TTAA 5 cut(s) 23, 404, 465, 681, 699
SatI GCNGC 2 cut(s) 282, 364
Sau3AI GATC 3 cut(s) 48, 200, 388
Sau96I GGNCC 2 cut(s) 233, 344
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 3 cut(s) 454, 479, 673
SduI GDGCHC 4 cut(s) 38, 135, 302, 454
SetI ASST 6 cut(s) 46, 172, 381, 498, 532, 569
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 233, 344
Sse9I AATT 4 cut(s) 54, 184, 405, 615
SsiI CCGC 3 cut(s) 143, 364, 534
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 452, 477, 671
TaaI ACNGT 6 cut(s) 82, 95, 137, 359, 661, 679
TaqI TCGA 2 cut(s) 601, 704
TasI AATT 4 cut(s) 54, 184, 405, 615
TatI WGTACW 2 cut(s) 77, 291
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 121, 628
Tru1I TTAA 5 cut(s) 23, 404, 465, 681, 699
Tru9I TTAA 5 cut(s) 23, 404, 465, 681, 699
TscAI CASTG 3 cut(s) 100, 153, 664
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 1 cut(s) 638
TspRI CASTG 3 cut(s) 100, 153, 664
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 233, 344
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.