Rh6CG026600

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000259
Physical Location & Seq
Forward (+)
2341591 .. 2342082
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG026600.1

Sequence Viewer

Length: 492 bp
ATGGGGTTTAGCAAGCTTTTCTTTGGTGTATGCTGCTTAGCAGTAATCATGATATCTCATGTCACTCAAGCCAGAGTAATTAACAATCTCAACCAAGGCTTCATTGATGAACACAACAAAGCTCGAGCAGAGGTCGGTGTTGGTCCGATCACGTGGAACAACACAGTAGCAATGTACGCACAAAAGTATGCCGATTCAAAAATTGAGACCTGCGAAATGGAGCATTCTGGAGGACCGTATGGCGAGAACTTGGCTGAAGGTTATGGTGAAATGACGGGTGCGCAAGCTGTGAAGTTTTGGGTGACAGAGAAGCCTAACTATGACTATGCCTCTAACAAATGTGTTAATGATGAATGTTTGCATTATACACAAGTGGTTTGGCGCGATTCTGTTCATCTTGGTTGTGCTAGGGCCAAGTGTGAAAATGGGTGGGTGTTTGTAATTTGTAACTATGATCCTCCTGGTAACTATATCGGAGAGCGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

5.48

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 36 - 151 3.1e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 218
AccII CGCG 1 cut(s) 384
AclWI GGATC 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 276
AcvI CACGTG 1 cut(s) 153
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 3 cut(s) 16, 122, 287
AluI AGCT 3 cut(s) 16, 122, 287
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 2 cut(s) 283, 384
AspS9I GGNCC 3 cut(s) 143, 233, 411
AsuHPI GGTGA 2 cut(s) 278, 313
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 2 cut(s) 143, 233
BbrPI CACGTG 1 cut(s) 153
BbvI GCAGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 408
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 34
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 2 cut(s) 143, 233
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 3 cut(s) 143, 233, 411
BmrFI CCNGG 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 413
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 123
Bsp143I GATC 2 cut(s) 147, 454
Bsp1720I GCTNAGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 413
BspFNI CGCG 1 cut(s) 384
BspHI TCATGA 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 147, 454
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 166, 237
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 14, 285
BstDEI CTNAG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 384
BstHHI GCGC 2 cut(s) 283, 384
BstKTI GATC 2 cut(s) 150, 457
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 147, 454
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 460
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 413
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 14, 285
CciI TCATGA 1 cut(s) 48
CfoI GCGC 2 cut(s) 283, 384
Cfr13I GGNCC 3 cut(s) 143, 233, 411
CseI GACGC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 49, 59
CviJI RGCY 8 cut(s) 16, 71, 99, 122, 254, 287, 313, 413
CviKI_1 RGCY 8 cut(s) 16, 71, 99, 122, 254, 287, 313, 413
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 149, 456
DpnII GATC 2 cut(s) 147, 454
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 143, 233
Eco57I CTGAAG 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 460
EcoRV GATATC 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 2 cut(s) 52, 62
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 48, 58
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 408
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 2 cut(s) 282, 383
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 413
HgaI GACGC 1 cut(s) 470
HhaI GCGC 2 cut(s) 283, 384
Hin1II CATG 2 cut(s) 52, 62
Hin6I GCGC 2 cut(s) 281, 382
HinP1I GCGC 2 cut(s) 281, 382
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 194, 386
HphI GGTGA 2 cut(s) 278, 313
Hpy188I TCNGA 2 cut(s) 147, 476
Hpy188III TCNNGA 2 cut(s) 49, 228
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 2 cut(s) 166, 237
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 2 cut(s) 52, 62
HspAI GCGC 2 cut(s) 281, 382
Kzo9I GATC 2 cut(s) 147, 454
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 85, 213, 223, 447, 474
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 4 cut(s) 61, 301, 446, 464
MalI GATC 2 cut(s) 149, 456
MboI GATC 2 cut(s) 147, 454
MluCI AATT 3 cut(s) 78, 201, 441
MnlI CCTC 4 cut(s) 124, 224, 340, 468
MseI TTAA 2 cut(s) 81, 345
MspR9I CCNGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 2 cut(s) 147, 454
NlaIII CATG 2 cut(s) 52, 62
NmuCI GTSAC 2 cut(s) 61, 301
NsbI TGCGCA 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 123
PagI TCATGA 1 cut(s) 48
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 194, 386
PkrI GCNGC 1 cut(s) 35
PmaCI CACGTG 1 cut(s) 153
PmlI CACGTG 1 cut(s) 153
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 460
PspCI CACGTG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 460
PspPI GGNCC 3 cut(s) 143, 233, 411
PspXI VCTCGAGB 1 cut(s) 123
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 81, 345
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 147, 454
Sau96I GGNCC 3 cut(s) 143, 233, 411
ScrFI CCNGG 1 cut(s) 462
SetI ASST 7 cut(s) 18, 124, 135, 155, 212, 262, 289
Sfr274I CTCGAG 1 cut(s) 123
SinI GGWCC 2 cut(s) 143, 233
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 66, 123
SmoI CTYRAG 2 cut(s) 66, 123
Sse9I AATT 3 cut(s) 78, 201, 441
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 166, 237
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 124
TasI AATT 3 cut(s) 78, 201, 441
TfiI GAWTC 2 cut(s) 194, 386
Tru1I TTAA 2 cut(s) 81, 345
Tru9I TTAA 2 cut(s) 81, 345
TseFI GTSAC 2 cut(s) 61, 301
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 2 cut(s) 61, 301
TspDTI ATGAA 4 cut(s) 91, 123, 366, 383
VpaK11BI GGWCC 2 cut(s) 143, 233
XhoI CTCGAG 1 cut(s) 123
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.