FvH4_2g02880

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000259
Physical Location & Seq
Forward (+)
2259693 .. 2261008
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02880.t1

Sequence Viewer

Length: 519 bp
ATGAGGCTCATCACCAAGCTTCTAGTAGCCACATTATTCTCCCTTGCTTTGATCTTAGCATCTCATCCTGCCCTAGCTCGTAAAGTCGGCAAGGGGATCCCCTACGACCCCAGTGGTCACCAAGGCTTTGTCGACGAGCACAATGTCGCTCGAGCGGCGGTCGGTGTTGGTCCGATCACTTGGAACTACACCCTAGCTGCCTACGCCCAACGCTACGCCAACACTCGAATCCACGGCTGCGACATGGAGCACTCTGAAGGGCCTTACGGCGAGAACCTGGCCGAGGGCTACGGAGAGATGACAGGCGCTCAAGCAGTGAAGTTTTGGGTGACGGAGAAGCCCGACTACGACTACGGCTCCAACAAGTGCGTTGGTGATGAATGTGGCCATTATACTCAGGTGGTTTGGCGCAATTCGGTTCACCTTGGTTGTGCAAGAGCCAAATGCACCAATGGATGGGTGTTTGTGATCTGCAGCTATGATCCTCCTGGGAACTATGAGGATGAACGTCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

173

Amino Acids

19.01

Weight (kDa)

6.14

Isoelectric Point (pI)

18.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 44 - 160 5.5e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 456
AccBSI CCGCTC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 132
AciI CCGC 2 cut(s) 155, 158
AclWI GGATC 3 cut(s) 91, 104, 476
AcoI YGGCCR 2 cut(s) 279, 385
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 283, 456
AjnI CCWGG 2 cut(s) 276, 487
AluBI AGCT 4 cut(s) 19, 77, 197, 477
AluI AGCT 4 cut(s) 19, 77, 197, 477
Alw21I GWGCWC 2 cut(s) 141, 252
AlwI GGATC 3 cut(s) 91, 104, 476
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 3 cut(s) 260, 279, 385
ApeKI GCWGC 3 cut(s) 197, 237, 474
AspLEI GCGC 2 cut(s) 308, 411
AspS9I GGNCC 2 cut(s) 170, 260
AsuHPI GGTGA 5 cut(s) 4, 110, 340, 386, 413
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 387
BamHI GGATCC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
Bbv12I GWGCWC 2 cut(s) 141, 252
BbvI GCAGC 3 cut(s) 184, 224, 486
BccI CCATC 1 cut(s) 450
BceAI ACGGC 3 cut(s) 250, 283, 370
BciT130I CCWGG 2 cut(s) 278, 489
BfaI CTAG 4 cut(s) 23, 74, 194, 517
BfmI CTRYAG 1 cut(s) 472
BfoI RGCGCY 1 cut(s) 309
BisI GCNGC 4 cut(s) 156, 198, 238, 475
BlsI GCNGC 4 cut(s) 157, 199, 239, 476
Bme1390I CCNGG 2 cut(s) 278, 489
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 170, 260
BmiI GGNNCC 2 cut(s) 98, 358
BmrFI CCNGG 2 cut(s) 278, 489
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 294
BsaJI CCNNGG 5 cut(s) 121, 232, 282, 424, 488
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 456
Bse1I ACTGG 1 cut(s) 111
BseBI CCWGG 2 cut(s) 278, 489
BseDI CCNNGG 5 cut(s) 121, 232, 282, 424, 488
BseGI GGATG 3 cut(s) 64, 461, 508
BseLI CCNNNNNNNGG 2 cut(s) 283, 456
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 184, 224, 486
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 262, 281, 387
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 141, 252
BsiHKCI CYCGRG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 283, 456
BsmFI GGGAC 1 cut(s) 495
BsnI GGCC 3 cut(s) 262, 281, 387
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 141, 252
Bsp143I GATC 5 cut(s) 51, 96, 174, 468, 481
BspACI CCGC 2 cut(s) 155, 158
BspANI GGCC 3 cut(s) 262, 281, 387
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 98, 358
BspMAI CTGCAG 1 cut(s) 476
BspPI GGATC 3 cut(s) 91, 104, 476
BsrBI CCGCTC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 5 cut(s) 121, 232, 282, 424, 488
BssMI GATC 5 cut(s) 51, 96, 174, 468, 481
BssT1I CCWWGG 2 cut(s) 121, 424
Bst2UI CCWGG 2 cut(s) 278, 489
BstDEI CTNAG 2 cut(s) 55, 396
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 116
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 3 cut(s) 64, 461, 508
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 2 cut(s) 308, 411
BstKTI GATC 5 cut(s) 54, 99, 177, 471, 484
BstMBI GATC 5 cut(s) 51, 96, 174, 468, 481
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 155, 203
BstNI CCWGG 2 cut(s) 278, 489
BstPI GGTNACC 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 276, 487
BstSFI CTRYAG 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 184, 224, 486
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 3 cut(s) 262, 281, 387
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 3 cut(s) 64, 461, 508
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 118, 321
CfoI GCGC 2 cut(s) 308, 411
Cfr13I GGNCC 2 cut(s) 170, 260
CviAII CATG 1 cut(s) 244
DdeI CTNAG 2 cut(s) 55, 396
DpnI GATC 5 cut(s) 53, 98, 176, 470, 483
DpnII GATC 5 cut(s) 51, 96, 174, 468, 481
EaeI YGGCCR 2 cut(s) 279, 385
Eco130I CCWWGG 2 cut(s) 121, 424
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 276, 487
EcoT14I CCWWGG 2 cut(s) 121, 424
ErhI CCWWGG 2 cut(s) 121, 424
FaeI CATG 1 cut(s) 247
FaiI YATR 4 cut(s) 245, 393, 480, 498
FaqI GGGAC 1 cut(s) 495
FatI CATG 1 cut(s) 243
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 156, 198, 238, 475
FokI GGATG 3 cut(s) 51, 468, 515
Fsp4HI GCNGC 4 cut(s) 156, 198, 238, 475
FspBI CTAG 4 cut(s) 23, 74, 194, 517
GlaI GCGC 2 cut(s) 307, 410
GluI GCNGC 4 cut(s) 156, 198, 238, 475
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 3 cut(s) 262, 281, 387
HhaI GCGC 2 cut(s) 308, 411
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 2 cut(s) 306, 409
HinP1I GCGC 2 cut(s) 306, 409
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 228
HphI GGTGA 5 cut(s) 4, 110, 340, 386, 413
Hpy166II GTNNAC 2 cut(s) 133, 421
Hpy188I TCNGA 2 cut(s) 174, 256
Hpy8I GTNNAC 2 cut(s) 133, 421
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 3 cut(s) 434, 447, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 203
HpyF3I CTNAG 2 cut(s) 55, 396
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 2 cut(s) 306, 409
Kzo9I GATC 5 cut(s) 51, 96, 174, 468, 481
LmnI GCTCC 2 cut(s) 247, 362
LpnPI CCDG 8 cut(s) 81, 124, 263, 288, 290, 383, 474, 501
Lsp1109I GCAGC 3 cut(s) 184, 224, 486
LweI GCATC 1 cut(s) 68
MaeI CTAG 4 cut(s) 23, 74, 194, 517
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 116, 328
MalI GATC 5 cut(s) 53, 98, 176, 470, 483
MbiI CCGCTC 1 cut(s) 155
MboI GATC 5 cut(s) 51, 96, 174, 468, 481
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 2 cut(s) 141, 252
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 1 cut(s) 412
MluNI TGGCCA 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 3 cut(s) 277, 493, 495
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 387
MspR9I CCNGG 2 cut(s) 278, 489
MvaI CCWGG 2 cut(s) 278, 489
MwoI GCNNNNNNNGC 2 cut(s) 155, 203
NdeII GATC 5 cut(s) 51, 96, 174, 468, 481
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 2 cut(s) 98, 358
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 116, 328
PaeR7I CTCGAG 1 cut(s) 150
PfeI GAWTC 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 456
PkrI GCNGC 4 cut(s) 157, 199, 239, 476
Psp6I CCWGG 2 cut(s) 276, 487
PspEI GGTNACC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 276, 487
PspN4I GGNNCC 2 cut(s) 98, 358
PspPI GGNCC 2 cut(s) 170, 260
PspXI VCTCGAGB 1 cut(s) 150
PstI CTGCAG 1 cut(s) 476
PsuI RGATCY 1 cut(s) 96
SalI GTCGAC 1 cut(s) 131
SatI GCNGC 4 cut(s) 156, 198, 238, 475
Sau3AI GATC 5 cut(s) 51, 96, 174, 468, 481
Sau96I GGNCC 2 cut(s) 170, 260
ScrFI CCNGG 2 cut(s) 278, 489
SduI GDGCHC 2 cut(s) 141, 252
SetI ASST 8 cut(s) 21, 79, 199, 279, 402, 426, 479, 511
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 472
Sfr274I CTCGAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 150, 309
SmoI CTYRAG 2 cut(s) 150, 309
Sse9I AATT 1 cut(s) 412
SsiI CCGC 2 cut(s) 155, 158
SspMI CTAG 4 cut(s) 23, 74, 194, 517
StyD4I CCNGG 2 cut(s) 276, 487
StyI CCWWGG 2 cut(s) 121, 424
TaiI ACGT 1 cut(s) 511
TaqI TCGA 3 cut(s) 132, 151, 226
TasI AATT 1 cut(s) 412
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 228
TscAI CASTG 2 cut(s) 118, 321
TseFI GTSAC 2 cut(s) 116, 328
TseI GCWGC 3 cut(s) 197, 237, 474
Tsp45I GTSAC 2 cut(s) 116, 328
TspDTI ATGAA 2 cut(s) 393, 519
TspGWI ACGGA 2 cut(s) 306, 347
TspRI CASTG 2 cut(s) 118, 321
Van91I CCANNNNNTGG 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 4 cut(s) 23, 74, 194, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.