Rw6G002370

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000259
Physical Location & Seq
Reverse (-)
3931289 .. 3931816
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002370.1

Sequence Viewer

Length: 528 bp
ATGGGGTTTAGCAAGCTTTTCTTTGGTGTATGCTGCTTAGCAGTAATCATTATATTTCATGTCTCTCAAGCAACAGTAATTAACAATCCCAACCAAGGCTTCATTGATGAACACAACAACAATCCCAACCAAGGCTTCATTGATGAACATAACAAAGCTCGAGCAGAGGTCGGTGTTGGTCCAATCACATGGAACAACACAGTAGCAATGTACGCACAAAAGTATGCCGATTCAAAAATTGAGACCTGCGAAATGGAGCATTCTGGAGGACCCTATGGCGAGAACTTGGCTGAAGGTTATGGTGAAATGACGGGTGCGCAAGCTGTGAAGTTTTGGGTGACAGAGAAGCCTAACTATGACCATGCCTCTAACAAATGTGTTAATGATGAATGTTTGCATTATACACAAGTGGTTTGGCGCGATTCTGTTCATCTTGGTTGTGCTAGGGCCAAGTGTAAAAATGGGTGGGTGTTTGTAATTTGTAACTATGATCCTCCTGGTAACTATATTGGAGAGCGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

175

Amino Acids

19.59

Weight (kDa)

5.58

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 48 - 163 5.5e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 254
AccII CGCG 1 cut(s) 420
AclWI GGATC 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 95, 131
AgsI TTSAA 1 cut(s) 234
AjnI CCWGG 1 cut(s) 496
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 119, 151
AluBI AGCT 3 cut(s) 16, 158, 323
AluI AGCT 3 cut(s) 16, 158, 323
Alw26I GTCTC 2 cut(s) 67, 236
AlwI GGATC 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 2 cut(s) 319, 420
AspS9I GGNCC 3 cut(s) 179, 269, 447
AsuHPI GGTGA 2 cut(s) 314, 349
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 2 cut(s) 179, 269
BbvI GCAGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 67, 236
BfaI CTAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 254
BisI GCNGC 1 cut(s) 34
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 2 cut(s) 179, 269
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 3 cut(s) 179, 269, 447
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 94, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 131
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 94, 130
BseLI CCNNNNNNNGG 2 cut(s) 95, 131
BseMI GCAATG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 2 cut(s) 95, 131
BsmAI GTCTC 2 cut(s) 67, 236
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 449
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 159
Bsp143I GATC 1 cut(s) 490
Bsp1720I GCTNAGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 449
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 94, 130
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 2 cut(s) 94, 130
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 76, 202
BstC8I GCNNGC 2 cut(s) 14, 321
BstDEI CTNAG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 2 cut(s) 319, 420
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 2 cut(s) 67, 236
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 449
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 14, 321
CfoI GCGC 2 cut(s) 319, 420
Cfr13I GGNCC 3 cut(s) 179, 269, 447
CseI GACGC 1 cut(s) 506
Csp6I GTAC 1 cut(s) 211
CviAII CATG 3 cut(s) 59, 189, 362
CviJI RGCY 8 cut(s) 16, 99, 135, 158, 290, 323, 349, 449
CviKI_1 RGCY 8 cut(s) 16, 99, 135, 158, 290, 323, 349, 449
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 94, 130
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 179, 269
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 94, 130
ErhI CCWWGG 2 cut(s) 94, 130
FaeI CATG 3 cut(s) 62, 192, 365
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 504
FatI CATG 3 cut(s) 58, 188, 361
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 444
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 2 cut(s) 318, 419
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 449
HgaI GACGC 1 cut(s) 506
HhaI GCGC 2 cut(s) 319, 420
Hin1II CATG 3 cut(s) 62, 192, 365
Hin6I GCGC 2 cut(s) 317, 418
HinP1I GCGC 2 cut(s) 317, 418
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 230, 422
HphI GGTGA 2 cut(s) 314, 349
Hpy188III TCNNGA 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 76, 202
HpyCH4V TGCA 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 37
Hsp92II CATG 3 cut(s) 62, 192, 365
HspAI GCGC 2 cut(s) 317, 418
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 4 cut(s) 249, 259, 483, 510
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 3 cut(s) 337, 482, 500
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MluCI AATT 3 cut(s) 78, 237, 477
MnlI CCTC 4 cut(s) 160, 260, 376, 504
MseI TTAA 2 cut(s) 81, 381
MspR9I CCNGG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 490
NlaIII CATG 3 cut(s) 62, 192, 365
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 337
NsbI TGCGCA 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 159
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 230, 422
PkrI GCNGC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 3 cut(s) 179, 269, 447
PspPPI RGGWCCY 1 cut(s) 269
PspXI VCTCGAGB 1 cut(s) 159
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 2 cut(s) 81, 381
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 3 cut(s) 179, 269, 447
ScrFI CCNGG 1 cut(s) 498
SetI ASST 6 cut(s) 18, 160, 171, 248, 298, 325
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 2 cut(s) 179, 269
SlaI CTCGAG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 66, 159
SmoI CTYRAG 2 cut(s) 66, 159
Sse9I AATT 3 cut(s) 78, 237, 477
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 2 cut(s) 94, 130
TaaI ACNGT 2 cut(s) 76, 202
TaqI TCGA 1 cut(s) 160
TasI AATT 3 cut(s) 78, 237, 477
TfiI GAWTC 2 cut(s) 230, 422
Tru1I TTAA 2 cut(s) 81, 381
Tru9I TTAA 2 cut(s) 81, 381
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 7 cut(s) 47, 91, 123, 127, 159, 402, 419
VpaK11BI GGWCC 2 cut(s) 179, 269
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.