Rorug05G0526400

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000259
Physical Location & Seq
Forward (+)
71519034 .. 71519960
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0526400.1

Sequence Viewer

Length: 927 bp
ATGTTCTGGAATGATGATGTGAAGGTGGAGGTGGGTACGACGTCACAACATCATATTAATATTATGGTTGATGGAGGACCTGGAACCCCTAGGTGGAGACTTACAGGTTTTTACGGATTTGCTCGAATGGTGGATAGAGACAAATCATGGCAGCTTTTGCGTGATTTGAGTGATTTGGAGACCCTTCCCTGGGTCGTTATCGGGGATTTTGATGAAATCCTAAATAGCAGTGAGAAGAAAGATGGTCCGATTAGGGCAGAGAGGCAGATGCGTGGTTTTAGAGAAGCCCTAGGGTATGGGGATTTGCTTGATCTTGGTTTTCAGGGGCCTCAGGCAACTTGGTGGAATTCTGAAACCCAGTTACGGTTGGACAGGGCTGTGTGTACACCGACCTGGTGTGATATTTTTGGTTTTTCACGTCTGAAGCATCTCCCACCAAGTGATTCCGATCATGTGCCAATACTGCTACAAGCTAGTACTGTTCCTCTTCCCACACGTCCTCATCATCATCGCTTCAAATTTGAAGCACATTGGTTGCAACATGAAGAATGTGATGGCGTTGTACACCAAGCCTGGCAGACAGATGTGTCCGGTTTGCCAATGTATCAATTGTCCAAGAAGATAGCTTATACTAGAATGCATCTAGATGATTGGCAGAGGAAGACGTTCAAGGGTAGACAGATGGAAATGTTAGGGGTTCGAGCACGTTTGGAGGAGTTGCTAGATGCAACGCTTTCTGATACTGTGATTATGGAGAAGAAGCTTTTGTCTGAACGTCTCCAAACTTTATTATCTCAAGAAGAATCTTTCTGCCGACAAAGATCGAAAGTAACTTGGTTGAAGGAAGGAGATCGTAACATGGGTTATTTTCACCGGAAGGCAGCAAATAGAAAAAGGAAAAATACTATACATGCATGGTCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

308

Amino Acids

36.0

Weight (kDa)

8.3

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 27 - 148 2.3e-07 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
AatII GACGTC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 676
AcsI RAATTY 2 cut(s) 346, 518
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 4 cut(s) 37, 385, 478, 564
AfiI CCNNNNNNNGG 4 cut(s) 93, 189, 190, 363
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 4 cut(s) 517, 524, 670, 841
AjiI CACGTC 2 cut(s) 419, 497
AjnI CCWGG 4 cut(s) 79, 188, 392, 572
AluBI AGCT 4 cut(s) 154, 473, 626, 763
AluI AGCT 4 cut(s) 154, 473, 626, 763
Alw21I GWGCWC 1 cut(s) 706
Alw26I GTCTC 4 cut(s) 91, 132, 173, 782
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 151, 881
ApoI RAATTY 2 cut(s) 346, 518
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 665
AspA2I CCTAGG 2 cut(s) 89, 289
AspS9I GGNCC 3 cut(s) 77, 245, 326
AsuHPI GGTGA 1 cut(s) 863
AvaII GGWCC 2 cut(s) 77, 245
AvrII CCTAGG 2 cut(s) 89, 289
AxyI CCTNAGG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 2 cut(s) 163, 893
BccI CCATC 4 cut(s) 65, 236, 548, 676
BciT130I CCWGG 4 cut(s) 81, 190, 394, 574
BcoDI GTCTC 4 cut(s) 91, 132, 173, 782
BfaI CTAG 6 cut(s) 90, 290, 474, 633, 644, 722
BisI GCNGC 2 cut(s) 152, 882
BlnI CCTAGG 2 cut(s) 89, 289
BlsI GCNGC 2 cut(s) 153, 883
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 4 cut(s) 81, 190, 394, 574
Bme18I GGWCC 2 cut(s) 77, 245
BmgBI CACGTC 2 cut(s) 419, 497
BmgT120I GGNCC 3 cut(s) 77, 245, 326
BmiI GGNNCC 2 cut(s) 85, 327
BmrFI CCNGG 4 cut(s) 81, 190, 394, 574
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 4 cut(s) 258, 436, 649, 715
BmuI ACTGGG 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 780
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 89, 188, 189, 289
BsaWI WCCGGW 2 cut(s) 590, 873
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 189, 190, 363
Bse1I ACTGG 1 cut(s) 358
Bse21I CCTNAGG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 4 cut(s) 81, 190, 394, 574
BseDI CCNNGG 4 cut(s) 89, 188, 189, 289
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 4 cut(s) 93, 189, 190, 363
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 728
BseXI GCAGC 2 cut(s) 163, 893
BshFI GGCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 706
BsiSI CCGG 2 cut(s) 591, 874
BslI CCNNNNNNNGG 4 cut(s) 93, 189, 190, 363
BsmAI GTCTC 4 cut(s) 91, 132, 173, 782
BsmBI CGTCTC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 1 cut(s) 328
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 706
Bsp1407I TGTACA 2 cut(s) 383, 562
Bsp143I GATC 4 cut(s) 310, 448, 821, 850
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 85, 327
BspTNI GGTCTC 1 cut(s) 173
BsrGI TGTACA 2 cut(s) 383, 562
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 4 cut(s) 89, 188, 189, 289
BssMI GATC 4 cut(s) 310, 448, 821, 850
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 89, 289
Bst2UI CCWGG 4 cut(s) 81, 190, 394, 574
Bst4CI ACNGT 3 cut(s) 366, 481, 745
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 157
BstAUI TGTACA 2 cut(s) 383, 562
BstDEI CTNAG 1 cut(s) 330
BstKTI GATC 4 cut(s) 313, 451, 824, 853
BstMAI GTCTC 4 cut(s) 91, 132, 173, 782
BstMBI GATC 4 cut(s) 310, 448, 821, 850
BstMWI GCNNNNNNNGC 2 cut(s) 157, 463
BstNI CCWGG 4 cut(s) 81, 190, 394, 574
BstNSI RCATGY 1 cut(s) 914
BstSCI CCNGG 4 cut(s) 79, 188, 392, 572
BstV1I GCAGC 2 cut(s) 163, 893
BstV2I GAAGAC 1 cut(s) 668
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 494
BtrI CACGTC 2 cut(s) 419, 497
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
Cfr13I GGNCC 3 cut(s) 77, 245, 326
CsiI ACCWGGT 1 cut(s) 392
Csp6I GTAC 4 cut(s) 36, 384, 477, 563
CviAII CATG 6 cut(s) 147, 452, 542, 859, 911, 915
CviJI RGCY 8 cut(s) 154, 287, 328, 377, 473, 572, 626, 763
CviKI_1 RGCY 8 cut(s) 154, 287, 328, 377, 473, 572, 626, 763
CviQI GTAC 4 cut(s) 36, 384, 477, 563
DdeI CTNAG 1 cut(s) 330
DpnI GATC 4 cut(s) 312, 450, 823, 852
DpnII GATC 4 cut(s) 310, 448, 821, 850
DraIII CACNNNGTG 1 cut(s) 440
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 89, 289
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 77, 245
Eco57I CTGAAG 1 cut(s) 443
Eco81I CCTNAGG 1 cut(s) 330
EcoO109I RGGNCCY 2 cut(s) 77, 326
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 4 cut(s) 79, 188, 392, 572
EcoT14I CCWWGG 2 cut(s) 89, 289
EcoT22I ATGCAT 2 cut(s) 642, 916
ErhI CCWWGG 2 cut(s) 89, 289
Esp3I CGTCTC 1 cut(s) 782
FaeI CATG 6 cut(s) 150, 455, 545, 862, 914, 918
FatI CATG 6 cut(s) 146, 451, 541, 858, 910, 914
FblI GTMKAC 1 cut(s) 676
Fnu4HI GCNGC 2 cut(s) 152, 882
Fsp4HI GCNGC 2 cut(s) 152, 882
FspBI CTAG 6 cut(s) 90, 290, 474, 633, 644, 722
GluI GCNGC 2 cut(s) 152, 882
HaeIII GGCC 1 cut(s) 328
HapII CCGG 2 cut(s) 591, 874
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 6 cut(s) 150, 455, 545, 862, 914, 918
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 2 cut(s) 443, 803
HpaII CCGG 2 cut(s) 591, 874
HphI GGTGA 1 cut(s) 863
Hpy166II GTNNAC 4 cut(s) 384, 386, 565, 677
Hpy188I TCNGA 6 cut(s) 249, 352, 423, 448, 739, 772
Hpy188III TCNNGA 3 cut(s) 7, 644, 797
Hpy8I GTNNAC 4 cut(s) 384, 386, 565, 677
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 5 cut(s) 16, 194, 835, 839, 871
HpyCH4III ACNGT 3 cut(s) 366, 481, 745
HpyCH4IV ACGT 6 cut(s) 41, 418, 496, 665, 706, 775
HpyCH4V TGCA 4 cut(s) 538, 640, 728, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 463
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 6 cut(s) 41, 418, 496, 665, 706, 775
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 6 cut(s) 150, 455, 545, 862, 914, 918
Kzo9I GATC 4 cut(s) 310, 448, 821, 850
Lsp1109I GCAGC 2 cut(s) 163, 893
LweI GCATC 4 cut(s) 258, 436, 649, 715
MabI ACCWGGT 1 cut(s) 392
MaeI CTAG 6 cut(s) 90, 290, 474, 633, 644, 722
MaeII ACGT 6 cut(s) 41, 418, 496, 665, 706, 775
MaeIII GTNAC 4 cut(s) 42, 360, 829, 854
MalI GATC 4 cut(s) 312, 450, 823, 852
MboI GATC 4 cut(s) 310, 448, 821, 850
MboII GAAGA 7 cut(s) 247, 479, 557, 631, 673, 769, 812
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 706
MluCI AATT 3 cut(s) 346, 518, 608
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 8 cut(s) 22, 68, 255, 339, 495, 510, 651, 706
Mph1103I ATGCAT 2 cut(s) 642, 916
MroXI GAANNNNTTC 1 cut(s) 665
MseI TTAA 2 cut(s) 57, 925
MslI CAYNNNNRTG 1 cut(s) 645
MspI CCGG 2 cut(s) 591, 874
MspR9I CCNGG 4 cut(s) 81, 190, 394, 574
MunI CAATTG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 4 cut(s) 81, 190, 394, 574
MwoI GCNNNNNNNGC 2 cut(s) 157, 463
NdeII GATC 4 cut(s) 310, 448, 821, 850
NlaIII CATG 6 cut(s) 150, 455, 545, 862, 914, 918
NlaIV GGNNCC 2 cut(s) 85, 327
NmuCI GTSAC 1 cut(s) 42
NsiI ATGCAT 2 cut(s) 642, 916
NspI RCATGY 1 cut(s) 914
PasI CCCWGGG 1 cut(s) 189
PctI GAATGC 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 2 cut(s) 443, 803
PkrI GCNGC 2 cut(s) 153, 883
PpuMI RGGWCCY 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 4 cut(s) 79, 188, 392, 572
PspGI CCWGG 4 cut(s) 79, 188, 392, 572
PspN4I GGNNCC 2 cut(s) 85, 327
PspPI GGNCC 3 cut(s) 77, 245, 326
PspPPI RGGWCCY 1 cut(s) 77
RsaI GTAC 4 cut(s) 37, 385, 478, 564
RsaNI GTAC 4 cut(s) 36, 384, 477, 563
RseI CAYNNNNRTG 1 cut(s) 645
SaqAI TTAA 2 cut(s) 57, 925
SatI GCNGC 2 cut(s) 152, 882
Sau3AI GATC 4 cut(s) 310, 448, 821, 850
Sau96I GGNCC 3 cut(s) 77, 245, 326
ScaI AGTACT 1 cut(s) 478
ScrFI CCNGG 4 cut(s) 81, 190, 394, 574
SduI GDGCHC 1 cut(s) 706
SexAI ACCWGGT 1 cut(s) 392
SfaNI GCATC 4 cut(s) 258, 436, 649, 715
SinI GGWCC 2 cut(s) 77, 245
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
Sse9I AATT 3 cut(s) 346, 518, 608
SspI AATATT 1 cut(s) 61
SspMI CTAG 6 cut(s) 90, 290, 474, 633, 644, 722
StyD4I CCNGG 4 cut(s) 79, 188, 392, 572
StyI CCWWGG 2 cut(s) 89, 289
TaaI ACNGT 3 cut(s) 366, 481, 745
TaiI ACGT 6 cut(s) 44, 421, 499, 668, 709, 778
TaqI TCGA 3 cut(s) 124, 700, 824
TasI AATT 3 cut(s) 346, 518, 608
TatI WGTACW 3 cut(s) 383, 476, 562
TfiI GAWTC 2 cut(s) 443, 803
Tru1I TTAA 2 cut(s) 57, 925
Tru9I TTAA 2 cut(s) 57, 925
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 2 cut(s) 151, 881
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 228, 558
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 77, 245
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 2 cut(s) 346, 518
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 1 cut(s) 914
XmaJI CCTAGG 2 cut(s) 89, 289
XmiI GTMKAC 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 6 cut(s) 90, 290, 474, 633, 644, 722
ZraI GACGTC 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 478
Zsp2I ATGCAT 2 cut(s) 642, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.