MD05G1110200.v1.1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000259
Physical Location & Seq
Reverse (-)
22647627 .. 22648109
483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1110200.v1.1.491

Sequence Viewer

Length: 483 bp
ATGGCGTTCAACAAGAAGCTTTTATTCTCTGTTTGCTGCGCCACATTAGTGTTCACTCTTGTCTCCGCCCTTTCCCCTGAAGAGATCAAAGCCACCATGGATGAACACAACAAGCCCCGCGCTGAGGTCGGTAACGCTCCACTCAAGTGGAACGAGACCTTAGCCCAGTACGCTAAAGAATATGCTAACAAAAGAGTTGGCGACTGCGTGATGGAGCACTCAATGGGGCGTTGGGGTGAGAACTTGGCCTCAGGTGCCGGCATGACTGCCGCCGATGCCACCAAATATTGGGTTACCGAGAAGGAGTTCTATGACCACAAATCAAACAAATGTGTCAAAGAGGAATGTGGTCACTACCTTGCTGTGATTTGGGGCAAAACCACCGAGGTAGGATGTGGTGTTTCAAAGTGCAACAATGGAGTGAACTACGTCGTTTGCAGCTACGATCCCATGTATCAGCCGGAGGACGAACGTCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

5.82

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 34 - 148 9.2e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 288
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 66, 118, 270
AclWI GGATC 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 124, 288
AgsI TTSAA 2 cut(s) 10, 405
AleI CACNNNNGTG 2 cut(s) 47, 145
AluBI AGCT 2 cut(s) 19, 441
AluI AGCT 2 cut(s) 19, 441
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 67, 149
AlwI GGATC 1 cut(s) 440
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 36, 438
Asp700I GAANNNNTTC 1 cut(s) 305
AspLEI GCGC 2 cut(s) 41, 122
AsuHPI GGTGA 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 250
BanI GGYRCC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 23, 450
BccI CCATC 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 67, 149
BfaI CTAG 1 cut(s) 481
BisI GCNGC 3 cut(s) 37, 270, 439
BlsI GCNGC 3 cut(s) 38, 271, 440
BmiI GGNNCC 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 471
Bpu10I CCTNAGC 2 cut(s) 123, 160
BpuEI CTTGAG 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 96, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 288
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 166
Bse21I CCTNAGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 96, 384
BseGI GGATG 2 cut(s) 106, 398
BseLI CCNNNNNNNGG 2 cut(s) 124, 288
BseMII CTCAG 2 cut(s) 114, 264
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 23, 450
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 258, 461
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 2 cut(s) 124, 288
BsmAI GTCTC 2 cut(s) 67, 149
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 84, 445
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 3 cut(s) 66, 118, 270
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 115, 263
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 96, 384
BssMI GATC 2 cut(s) 84, 445
BssT1I CCWWGG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 3 cut(s) 123, 160, 250
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 2 cut(s) 106, 398
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 2 cut(s) 41, 122
BstKTI GATC 2 cut(s) 87, 448
BstMAI GTCTC 2 cut(s) 67, 149
BstMBI GATC 2 cut(s) 84, 445
BstMWI GCNNNNNNNGC 3 cut(s) 170, 254, 275
BstPAI GACNNNNGTC 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 292
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 23, 450
BstXI CCANNNNNNTGG 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 106, 398
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 2 cut(s) 41, 122
Cfr10I RCCGGY 1 cut(s) 257
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 97, 262, 451
CviJI RGCY 7 cut(s) 19, 92, 115, 164, 248, 441, 460
CviKI_1 RGCY 7 cut(s) 19, 92, 115, 164, 248, 441, 460
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 123, 160, 250
DpnI GATC 2 cut(s) 86, 447
DpnII GATC 2 cut(s) 84, 445
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 250
Eco91I GGTNACC 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 3 cut(s) 100, 265, 454
FaiI YATR 5 cut(s) 98, 183, 263, 312, 452
FaqI GGGAC 1 cut(s) 459
FatI CATG 3 cut(s) 96, 261, 450
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 37, 270, 439
FokI GGATG 2 cut(s) 113, 405
Fsp4HI GCNGC 3 cut(s) 37, 270, 439
FspBI CTAG 1 cut(s) 481
GlaI GCGC 2 cut(s) 40, 121
GluI GCNGC 3 cut(s) 37, 270, 439
HaeIII GGCC 1 cut(s) 248
HapII CCGG 2 cut(s) 258, 461
HhaI GCGC 2 cut(s) 41, 122
Hin1II CATG 3 cut(s) 100, 265, 454
Hin6I GCGC 2 cut(s) 39, 120
HinP1I GCGC 2 cut(s) 39, 120
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 2 cut(s) 258, 461
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 54, 424
Hpy8I GTNNAC 2 cut(s) 54, 424
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 429, 472
HpyCH4V TGCA 2 cut(s) 411, 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 254, 275
HpyF3I CTNAG 3 cut(s) 123, 160, 250
HpySE526I ACGT 2 cut(s) 429, 472
Hsp92II CATG 3 cut(s) 100, 265, 454
HspAI GCGC 2 cut(s) 39, 120
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 84, 445
LmnI GCTCC 2 cut(s) 142, 214
LpnPI CCDG 5 cut(s) 90, 179, 237, 271, 474
Lsp1109I GCAGC 2 cut(s) 23, 450
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 481
MaeII ACGT 2 cut(s) 429, 472
MaeIII GTNAC 3 cut(s) 131, 292, 350
MalI GATC 2 cut(s) 86, 447
MboI GATC 2 cut(s) 84, 445
MboII GAAGA 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 219
MnlI CCTC 5 cut(s) 118, 259, 334, 379, 457
MroNI GCCGGC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 305
MslI CAYNNNNRTG 2 cut(s) 47, 145
MspI CCGG 2 cut(s) 258, 461
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 170, 254, 275
NaeI GCCGGC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 96
NdeII GATC 2 cut(s) 84, 445
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 3 cut(s) 100, 265, 454
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 350
OliI CACNNNNGTG 2 cut(s) 47, 145
PdiI GCCGGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 3 cut(s) 38, 271, 440
PshAI GACNNNNGTC 1 cut(s) 471
PspEI GGTNACC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 256
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 47, 145
SatI GCNGC 3 cut(s) 37, 270, 439
Sau3AI GATC 2 cut(s) 84, 445
SduI GDGCHC 1 cut(s) 219
SetI ASST 9 cut(s) 21, 129, 161, 256, 360, 390, 432, 443, 475
SfaNI GCATC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 47, 145
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 3 cut(s) 66, 118, 270
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 96
TaiI ACGT 2 cut(s) 432, 475
TauI GCSGC 1 cut(s) 272
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 2 cut(s) 36, 438
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 117
Van91I CCANNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.