Prupe.8G153300_v2.0.a1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000259
Physical Location & Seq
Reverse (-)
16577313 .. 16577787
475 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G153300.1

Sequence Viewer

Length: 444 bp
ATGAAGCTTCTTTTGGCCATCCGTTGCGTCGCATTGGTCTTCACTGTTGTCTCTGCAAACATTTCCAAAGCAGAGATCAATGGCTTCGACGAGGAGCACAACAAGGCTCGTAAAGAGGTCGGCAACAAACCCCTCAAGTGGAACACGACCTTAGCCCAGTATGCCCAAGAATATGCTGAGAAAAGAGTTGACGATTGCGCCATGGATCCCTTGATTGGGCGTTGGGGCGGTGCTGCTGCTACCAAGTATTGGGTCACCAAGAAGGAGTTCTATGACGAAAAGTCCAACAAATGCGTCAAAGACGAATGTGGTCACTACCTTGCTGTGGTCTGGGGCAAAATTACCAAGGTCGGATGTGGCATTTCAAAGTGCAAGAATGGACAAAACTACGTAGTTTGCAGCTACGATCCCATGTACCAGCCCGAAGACGAGCGCCCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

148

Amino Acids

16.66

Weight (kDa)

8.41

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AciI CCGC 1 cut(s) 228
AclWI GGATC 3 cut(s) 200, 213, 401
AcoI YGGCCR 1 cut(s) 15
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 5 cut(s) 138, 215, 216, 249, 325
AgsI TTSAA 1 cut(s) 366
AhdI GACNNNNNGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 251, 283
AluBI AGCT 2 cut(s) 7, 402
AluI AGCT 2 cut(s) 7, 402
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 3 cut(s) 200, 213, 401
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 3 cut(s) 233, 236, 399
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 2 cut(s) 200, 435
AsuHPI GGTGA 1 cut(s) 247
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 205
BbsI GAAGAC 2 cut(s) 31, 432
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 220, 223, 411
BccI CCATC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 442
BfoI RGCGCY 1 cut(s) 436
BisI GCNGC 3 cut(s) 234, 237, 400
BlsI GCNGC 3 cut(s) 235, 238, 401
BmeRI GACNNNNNGTC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BpiI GAAGAC 2 cut(s) 31, 432
Bpu10I CCTNAGC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 201, 345
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 215, 216, 249, 325
Bse1I ACTGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 201, 345
BseGI GGATG 2 cut(s) 18, 359
BseLI CCNNNNNNNGG 5 cut(s) 138, 215, 216, 249, 325
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 220, 223, 411
BshFI GGCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 99
BslI CCNNNNNNNGG 5 cut(s) 138, 215, 216, 249, 325
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 75, 205, 406
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 3 cut(s) 200, 213, 401
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 201, 345
BssMI GATC 3 cut(s) 75, 205, 406
BssT1I CCWWGG 2 cut(s) 201, 345
Bst4CI ACNGT 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 391
BstDEI CTNAG 2 cut(s) 151, 177
BstDSI CCRYGG 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 253
BstF5I GGATG 2 cut(s) 18, 359
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 2 cut(s) 200, 435
BstKTI GATC 3 cut(s) 78, 208, 409
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 75, 205, 406
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 253
BstSNI TACGTA 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 220, 223, 411
BstV2I GAAGAC 2 cut(s) 31, 432
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 18, 359
BtsIMutI CAGTG 1 cut(s) 42
CfoI GCGC 2 cut(s) 200, 435
CseI GACGC 2 cut(s) 16, 283
Csp6I GTAC 1 cut(s) 415
CviAII CATG 2 cut(s) 202, 412
CviJI RGCY 7 cut(s) 7, 17, 84, 107, 155, 402, 421
CviKI_1 RGCY 7 cut(s) 7, 17, 84, 107, 155, 402, 421
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 151, 177
DpnI GATC 3 cut(s) 77, 207, 408
DpnII GATC 3 cut(s) 75, 205, 406
DriI GACNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 280
Eco105I TACGTA 1 cut(s) 391
Eco130I CCWWGG 2 cut(s) 201, 345
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 201, 345
ErhI CCWWGG 2 cut(s) 201, 345
FaeI CATG 2 cut(s) 205, 415
FaiI YATR 5 cut(s) 162, 174, 203, 273, 413
FatI CATG 2 cut(s) 201, 411
Fnu4HI GCNGC 3 cut(s) 234, 237, 400
FokI GGATG 2 cut(s) 5, 366
Fsp4HI GCNGC 3 cut(s) 234, 237, 400
FspBI CTAG 1 cut(s) 442
GlaI GCGC 2 cut(s) 199, 434
GluI GCNGC 3 cut(s) 234, 237, 400
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 1 cut(s) 17
HgaI GACGC 2 cut(s) 16, 283
HhaI GCGC 2 cut(s) 200, 435
Hin1II CATG 2 cut(s) 205, 415
Hin6I GCGC 2 cut(s) 198, 433
HinP1I GCGC 2 cut(s) 198, 433
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 5
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 2 cut(s) 32, 92
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 3 cut(s) 56, 372, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 151, 177
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 2 cut(s) 205, 415
HspAI GCGC 2 cut(s) 198, 433
Kzo9I GATC 3 cut(s) 75, 205, 406
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 170, 316, 431
Lsp1109I GCAGC 3 cut(s) 220, 223, 411
MaeI CTAG 1 cut(s) 442
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 253, 311
MalI GATC 3 cut(s) 77, 207, 408
MboI GATC 3 cut(s) 75, 205, 406
MboII GAAGA 2 cut(s) 31, 437
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 309, 331
MnlI CCTC 3 cut(s) 85, 109, 143
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 266
MscI TGGCCA 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 161
NcoI CCATGG 1 cut(s) 201
NdeII GATC 3 cut(s) 75, 205, 406
NlaIII CATG 2 cut(s) 205, 415
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 253, 311
PdmI GAANNNNTTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 3 cut(s) 235, 238, 401
Ppu21I YACGTR 1 cut(s) 391
PspEI GGTNACC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SatI GCNGC 3 cut(s) 234, 237, 400
Sau3AI GATC 3 cut(s) 75, 205, 406
SduI GDGCHC 1 cut(s) 99
SetI ASST 7 cut(s) 9, 120, 152, 321, 351, 393, 404
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SnaBI TACGTA 1 cut(s) 391
Sse9I AATT 1 cut(s) 339
SsiI CCGC 1 cut(s) 228
SspMI CTAG 1 cut(s) 442
StyI CCWWGG 2 cut(s) 201, 345
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 339
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 253, 311
TseI GCWGC 3 cut(s) 233, 236, 399
Tsp45I GTSAC 2 cut(s) 253, 311
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.