Rw6G003500

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000259
Physical Location & Seq
Forward (+)
5638482 .. 5639015
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003500.1

Sequence Viewer

Length: 534 bp
ATGCTTCTGGTCCAATTGTTATTCTCATATGCTTCCAAAATGGGGTTCAACAAACAAAACTTAATAGCCGTATGCTCCACAGCTTTGATCCTAATTACATATGTCCCTATAGCAAGTACAGTAGAAGACGACAGTGGCTTCCTCAAAGCACACAATGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCATTGGAATAAAACCATAGCTCAGTATGCGAAAAATTATGCCAATAAAAGATCTGTGGACTGCGCAATGGAGCATTCGAATGGTCCTTATGCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACTGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTCAGGTAGTTACGAGGGCAACAACCCAACTTGGTTGTGCAAGGGCCAAGTGCAAAAATGGCGATATGTTTGTAACCTGCAACTATGATCCTTCTACAGATTGGGACCAGCGTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

177

Amino Acids

19.83

Weight (kDa)

6.5

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 48 - 166 3.6e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 253
Acc36I ACCTGC 1 cut(s) 497
AciI CCGC 2 cut(s) 182, 403
AclWI GGATC 2 cut(s) 82, 494
AfaI GTAC 3 cut(s) 118, 332, 379
AfiI CCNNNNNNNGG 1 cut(s) 42
AgeI ACCGGT 2 cut(s) 311, 380
AgsI TTSAA 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 2 cut(s) 83, 209
AluI AGCT 2 cut(s) 83, 209
Alw21I GWGCWC 2 cut(s) 174, 341
Alw26I GTCTC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 337
AlwI GGATC 2 cut(s) 82, 494
AoxI GGCC 1 cut(s) 456
ApaLI GTGCAC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 320
AsiGI ACCGGT 2 cut(s) 311, 380
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 5 cut(s) 10, 272, 383, 456, 517
AsuHPI GGTGA 1 cut(s) 326
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 4 cut(s) 10, 272, 383, 517
AxyI CCTNAGG 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 132, 399
Bbv12I GWGCWC 2 cut(s) 174, 341
BbvI GCAGC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 108, 507
BfuAI ACCTGC 1 cut(s) 497
BglII AGATCT 1 cut(s) 239
BisI GCNGC 2 cut(s) 321, 403
BlsI GCNGC 2 cut(s) 322, 404
BmcAI AGTACT 1 cut(s) 332
Bme18I GGWCC 4 cut(s) 10, 272, 383, 517
BmgT120I GGNCC 5 cut(s) 10, 272, 383, 456, 517
BmiI GGNNCC 1 cut(s) 518
BoxI GACNNNNGTC 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 132, 399
Bpu14I TTCGAA 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 182
BsaWI WCCGGW 2 cut(s) 311, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse118I RCCGGY 2 cut(s) 311, 380
Bse1I ACTGG 1 cut(s) 338
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 2 cut(s) 261, 288
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 2 cut(s) 261, 288
BseMII CTCAG 5 cut(s) 224, 273, 333, 378, 428
BseNI ACTGG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 1 cut(s) 332
BshFI GGCC 1 cut(s) 458
BshTI ACCGGT 2 cut(s) 311, 380
BsiHKAI GWGCWC 2 cut(s) 174, 341
BsiSI CCGG 2 cut(s) 312, 381
BslFI GGGAC 2 cut(s) 89, 530
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 89, 530
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 458
Bso31I GGTCTC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 174, 341
Bsp143I GATC 3 cut(s) 87, 239, 499
BspACI CCGC 2 cut(s) 182, 403
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 5 cut(s) 223, 274, 334, 379, 427
BspLI GGNNCC 1 cut(s) 518
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 2 cut(s) 82, 494
BspT104I TTCGAA 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 261, 288
BsrFI RCCGGY 2 cut(s) 311, 380
BsrI ACTGG 1 cut(s) 338
BssAI RCCGGY 2 cut(s) 311, 380
BssMI GATC 3 cut(s) 87, 239, 499
Bst4CI ACNGT 4 cut(s) 121, 134, 176, 398
BstBI TTCGAA 1 cut(s) 266
BstDEI CTNAG 5 cut(s) 210, 282, 342, 387, 414
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 90, 242, 502
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 3 cut(s) 87, 239, 499
BstMWI GCNNNNNNNGC 2 cut(s) 215, 471
BstPAI GACNNNNGTC 1 cut(s) 522
BstSFI CTRYAG 2 cut(s) 108, 507
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 2 cut(s) 132, 399
BstX2I RGATCY 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 192
BstYI RGATCY 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 1 cut(s) 458
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 3 cut(s) 139, 185, 339
BveI ACCTGC 1 cut(s) 497
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 2 cut(s) 311, 380
Cfr13I GGNCC 5 cut(s) 10, 272, 383, 456, 517
CseI GACGC 1 cut(s) 512
Csp6I GTAC 3 cut(s) 117, 331, 378
CspAI ACCGGT 2 cut(s) 311, 380
CviJI RGCY 6 cut(s) 68, 83, 138, 209, 350, 458
CviKI_1 RGCY 6 cut(s) 68, 83, 138, 209, 350, 458
CviQI GTAC 3 cut(s) 117, 331, 378
DdeI CTNAG 5 cut(s) 210, 282, 342, 387, 414
DpnI GATC 3 cut(s) 89, 241, 501
DpnII GATC 3 cut(s) 87, 239, 499
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 4 cut(s) 10, 272, 383, 517
Eco81I CCTNAGG 1 cut(s) 387
FaqI GGGAC 2 cut(s) 89, 530
FauI CCCGC 1 cut(s) 189
FauNDI CATATG 2 cut(s) 28, 100
Fnu4HI GCNGC 2 cut(s) 321, 403
Fsp4HI GCNGC 2 cut(s) 321, 403
FspI TGCGCA 1 cut(s) 253
GlaI GCGC 1 cut(s) 253
GluI GCNGC 2 cut(s) 321, 403
HaeIII GGCC 1 cut(s) 458
HapII CCGG 2 cut(s) 312, 381
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 254
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 1 cut(s) 160
HpaII CCGG 2 cut(s) 312, 381
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 247, 339
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 2 cut(s) 247, 339
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 4 cut(s) 121, 134, 176, 398
HpyCH4V TGCA 5 cut(s) 190, 339, 452, 465, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 471
HpyF3I CTNAG 5 cut(s) 210, 282, 342, 387, 414
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 87, 239, 499
LmnI GCTCC 2 cut(s) 80, 259
LpnPI CCDG 6 cut(s) 319, 325, 394, 399, 401, 502
Lsp1109I GCAGC 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 421, 484
MalI GATC 3 cut(s) 89, 241, 501
MboI GATC 3 cut(s) 87, 239, 499
MboII GAAGA 2 cut(s) 137, 404
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 2 cut(s) 174, 341
MluCI AATT 3 cut(s) 14, 93, 223
MnlI CCTC 3 cut(s) 152, 382, 420
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 2 cut(s) 312, 381
MunI CAATTG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 215, 471
NdeI CATATG 2 cut(s) 28, 100
NdeII GATC 3 cut(s) 87, 239, 499
NlaIV GGNNCC 1 cut(s) 518
NsbI TGCGCA 1 cut(s) 253
NspV TTCGAA 1 cut(s) 266
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 160
PinAI ACCGGT 2 cut(s) 311, 380
PkrI GCNGC 2 cut(s) 322, 404
PshAI GACNNNNGTC 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 5 cut(s) 10, 272, 383, 456, 517
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 3 cut(s) 118, 332, 379
RsaNI GTAC 3 cut(s) 117, 331, 378
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 2 cut(s) 321, 403
Sau3AI GATC 3 cut(s) 87, 239, 499
Sau96I GGNCC 5 cut(s) 10, 272, 383, 456, 517
ScaI AGTACT 1 cut(s) 332
SduI GDGCHC 2 cut(s) 174, 341
SetI ASST 4 cut(s) 85, 211, 420, 491
SfcI CTRYAG 2 cut(s) 108, 507
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 4 cut(s) 10, 272, 383, 517
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 3 cut(s) 14, 93, 223
SsiI CCGC 2 cut(s) 182, 403
TaaI ACNGT 4 cut(s) 121, 134, 176, 398
TaqI TCGA 1 cut(s) 266
TasI AATT 3 cut(s) 14, 93, 223
TatI WGTACW 2 cut(s) 116, 330
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 3 cut(s) 139, 192, 346
TseI GCWGC 1 cut(s) 320
TspRI CASTG 3 cut(s) 139, 192, 346
VneI GTGCAC 1 cut(s) 337
VpaK11BI GGWCC 4 cut(s) 10, 272, 383, 517
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.