Rmu_sc0000391.1_g000027

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000391.1
OG0000259
Physical Location & Seq
Forward (+)
94801 .. 97022
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000391.1_g000027.1.cds

Sequence Viewer

Length: 879 bp
atggggttcaacaaacaaaacttaatagccgtatgctccgcagctttgatcttaattacttatgtccctctagcaagtacagtcgaagacgacagtggcttcctcaaagcacacaatgagattcgcaaagagcacggtctcccgccactgcaatggaataaaaccttagctgagtatgcacaaaattatgccaataaaagatctggggactgcgcaatggagcattcggatgctccttattctgagaacattgcgagtggtttgggtatgaccggtgaagcagcgacaaagtactggtgcaccgagaaagccgaatacgactacaacacaaataaatgtatcggtcctgaggaagacggttgccgccactacactattatagttacgaggataacaacccaacttggttgtgcaagggccaagtgcaaaaatggcgatatgtttgtatcctgcaactatgatccttctggagagccagaccagcgcaccttcttgcagcaaaaaccacgttggcaggtgacaatacgagaactgaaggagattgcgacagcttccgcagagtcggttgttggtaaaagaaggaagaggttgagtgagatgtcagcctctcccaagaaacttcgattgaaccttgaaatgggcatgaagaatcttgacactaaaaacataaggctgatcactgtggctccggcagggaccgttaagaatgataagacagaaaaggtgcccgcgctttgctgcgggacttattgttacatggtggagattatgattgatcttgttaaggggatcaattctcccttaacaaaaggaaaagctgcgcaaaatgctggagttgttgttggagctggttcgaggcattggttctaccacttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

292

Amino Acids

32.37

Weight (kDa)

8.76

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
Acc16I TGCGCA 2 cut(s) 214, 822
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 724
AccII CGCG 1 cut(s) 731
AciI CCGC 6 cut(s) 39, 143, 364, 555, 729, 741
AclWI GGATC 2 cut(s) 455, 797
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 2 cut(s) 79, 293
AfiI CCNNNNNNNGG 1 cut(s) 637
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 3 cut(s) 10, 628, 635
AluBI AGCT 5 cut(s) 44, 170, 551, 818, 848
AluI AGCT 5 cut(s) 44, 170, 551, 818, 848
Alw21I GWGCWC 2 cut(s) 135, 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 455, 797
AoxI GGCC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 5 cut(s) 41, 281, 496, 738, 818
AsiGI ACCGGT 1 cut(s) 272
AspLEI GCGC 4 cut(s) 215, 486, 733, 823
AspS9I GGNCC 3 cut(s) 344, 417, 696
AsuHPI GGTGA 2 cut(s) 287, 529
AvaII GGWCC 2 cut(s) 344, 696
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 2 cut(s) 302, 729
BanI GGYRCC 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 2 cut(s) 135, 302
BbvI GCAGC 5 cut(s) 53, 293, 508, 725, 805
BceAI ACGGC 1 cut(s) 14
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 505
BfuI GTATCC 1 cut(s) 457
BglII AGATCT 1 cut(s) 200
BisI GCNGC 6 cut(s) 42, 282, 364, 497, 739, 819
BlsI GCNGC 6 cut(s) 43, 283, 365, 498, 740, 820
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 344, 696
BmgT120I GGNCC 3 cut(s) 344, 417, 696
BmiI GGNNCC 3 cut(s) 687, 697, 726
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 2 cut(s) 93, 360
BpmI CTGGAG 2 cut(s) 489, 852
Bpu10I CCTNAGC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 4 cut(s) 670, 700, 825, 855
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 3 cut(s) 158, 222, 249
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 3 cut(s) 158, 222, 249
BseMII CTCAG 3 cut(s) 162, 234, 339
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 2 cut(s) 302, 729
BseXI GCAGC 5 cut(s) 53, 293, 508, 725, 805
Bsh1236I CGCG 1 cut(s) 731
BshFI GGCC 1 cut(s) 419
BshNI GGYRCC 1 cut(s) 724
BshTI ACCGGT 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 135, 302
BsiSI CCGG 2 cut(s) 273, 689
BslFI GGGAC 4 cut(s) 50, 221, 709, 757
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 4 cut(s) 50, 221, 709, 757
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 135, 302, 729
Bsp143I GATC 6 cut(s) 48, 200, 460, 675, 775, 789
BspACI CCGC 6 cut(s) 39, 143, 364, 555, 729, 741
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 3 cut(s) 163, 235, 340
BspFNI CGCG 1 cut(s) 731
BspLI GGNNCC 3 cut(s) 687, 697, 726
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 2 cut(s) 455, 797
BspT107I GGYRCC 1 cut(s) 724
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 158, 222, 249
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 272
BssMI GATC 6 cut(s) 48, 200, 460, 675, 775, 789
Bst4CI ACNGT 6 cut(s) 82, 95, 137, 359, 682, 700
Bst6I CTCTTC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 4 cut(s) 166, 171, 243, 348
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 731
BstHHI GCGC 4 cut(s) 215, 486, 733, 823
BstKTI GATC 6 cut(s) 51, 203, 463, 678, 778, 792
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 6 cut(s) 48, 200, 460, 675, 775, 789
BstMWI GCNNNNNNNGC 4 cut(s) 176, 432, 481, 827
BstSLI GKGCMC 2 cut(s) 302, 729
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 5 cut(s) 53, 293, 508, 725, 805
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 3 cut(s) 100, 146, 678
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 729
CfoI GCGC 4 cut(s) 215, 486, 733, 823
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 344, 417, 696
Csp6I GTAC 2 cut(s) 78, 292
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 2 cut(s) 643, 757
CviQI GTAC 2 cut(s) 78, 292
DdeI CTNAG 4 cut(s) 166, 171, 243, 348
DpnI GATC 6 cut(s) 50, 202, 462, 677, 777, 791
DpnII GATC 6 cut(s) 48, 200, 460, 675, 775, 789
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 344, 696
Eco57I CTGAAG 1 cut(s) 554
Eco81I CCTNAGG 1 cut(s) 348
FaeI CATG 2 cut(s) 646, 760
FaqI GGGAC 4 cut(s) 50, 221, 709, 757
FatI CATG 2 cut(s) 642, 756
FauI CCCGC 3 cut(s) 150, 734, 736
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 6 cut(s) 42, 282, 364, 497, 739, 819
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 6 cut(s) 42, 282, 364, 497, 739, 819
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 2 cut(s) 214, 822
GlaI GCGC 4 cut(s) 214, 485, 732, 822
GluI GCNGC 6 cut(s) 42, 282, 364, 497, 739, 819
GsuI CTGGAG 2 cut(s) 489, 852
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 273, 689
HhaI GCGC 4 cut(s) 215, 486, 733, 823
Hin1II CATG 2 cut(s) 646, 760
Hin6I GCGC 4 cut(s) 213, 484, 731, 821
HinP1I GCGC 4 cut(s) 213, 484, 731, 821
HinfI GANTC 3 cut(s) 121, 560, 649
HpaII CCGG 2 cut(s) 273, 689
HphI GGTGA 2 cut(s) 287, 529
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 2 cut(s) 229, 244
Hpy188III TCNNGA 3 cut(s) 347, 468, 653
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 4 cut(s) 474, 499, 529, 573
HpyCH4III ACNGT 6 cut(s) 82, 95, 137, 359, 682, 700
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 7 cut(s) 151, 179, 300, 413, 426, 453, 496
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 432, 481, 827
HpyF3I CTNAG 4 cut(s) 166, 171, 243, 348
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 2 cut(s) 646, 760
HspAI GCGC 4 cut(s) 213, 484, 731, 821
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 6 cut(s) 48, 200, 460, 675, 775, 789
LmnI GCTCC 5 cut(s) 41, 220, 238, 691, 845
Lsp1109I GCAGC 5 cut(s) 53, 293, 508, 725, 805
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 3 cut(s) 382, 517, 752
MalI GATC 6 cut(s) 50, 202, 462, 677, 777, 791
MboI GATC 6 cut(s) 48, 200, 460, 675, 775, 789
MboII GAAGA 4 cut(s) 98, 365, 595, 658
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 3 cut(s) 135, 302, 729
MluCI AATT 3 cut(s) 54, 184, 793
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 823
MnlI CCTC 7 cut(s) 78, 113, 343, 381, 579, 616, 849
MseI TTAA 5 cut(s) 23, 53, 702, 783, 803
MslI CAYNNNNRTG 2 cut(s) 151, 228
MspI CCGG 2 cut(s) 273, 689
Mva1269I GAATGC 1 cut(s) 223
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 4 cut(s) 176, 432, 481, 827
NdeII GATC 6 cut(s) 48, 200, 460, 675, 775, 789
NlaIII CATG 2 cut(s) 646, 760
NlaIV GGNNCC 3 cut(s) 687, 697, 726
NmuCI GTSAC 1 cut(s) 517
NsbI TGCGCA 2 cut(s) 214, 822
PaqCI CACCTGC 1 cut(s) 505
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 121, 649
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 6 cut(s) 43, 283, 365, 498, 740, 820
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 687, 697, 726
PspPI GGNCC 3 cut(s) 344, 417, 696
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 79, 293
RsaNI GTAC 2 cut(s) 78, 292
RseI CAYNNNNRTG 2 cut(s) 151, 228
SaqAI TTAA 5 cut(s) 23, 53, 702, 783, 803
SatI GCNGC 6 cut(s) 42, 282, 364, 497, 739, 819
Sau3AI GATC 6 cut(s) 48, 200, 460, 675, 775, 789
Sau96I GGNCC 3 cut(s) 344, 417, 696
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 3 cut(s) 135, 302, 729
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 2 cut(s) 344, 696
SmiMI CAYNNNNRTG 2 cut(s) 151, 228
Sse9I AATT 3 cut(s) 54, 184, 793
SsiI CCGC 6 cut(s) 39, 143, 364, 555, 729, 741
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 6 cut(s) 82, 95, 137, 359, 682, 700
TaiI ACGT 1 cut(s) 511
TaqI TCGA 3 cut(s) 84, 622, 854
TaqII GACCGA 1 cut(s) 332
TasI AATT 3 cut(s) 54, 184, 793
TatI WGTACW 2 cut(s) 77, 291
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 121, 649
Tru1I TTAA 5 cut(s) 23, 53, 702, 783, 803
Tru9I TTAA 5 cut(s) 23, 53, 702, 783, 803
TscAI CASTG 3 cut(s) 100, 153, 685
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 5 cut(s) 41, 281, 496, 738, 818
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 1 cut(s) 659
TspRI CASTG 3 cut(s) 100, 153, 685
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 344, 696
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.