Rh6BG036100

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000259
Physical Location & Seq
Forward (+)
5960394 .. 5961040
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG036100.1

Sequence Viewer

Length: 279 bp
ATGGAGCATTCAGATGCTCCTTATTCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACCGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTATTATAGTTACGAGGATAACAACCCAACTTGGTTGTGCAAGGGCCAAGTGCAAAAATGGCGATATGTTTGTATCCTGCAACTATGATCCTTCTGGAGAGCCAGACCATCGTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

92

Amino Acids

10.27

Weight (kDa)

5.02

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 6 - 81 5.2e-10 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 239
AfaI GTAC 2 cut(s) 77, 124
AgeI ACCGGT 2 cut(s) 56, 125
Alw21I GWGCWC 1 cut(s) 86
Alw44I GTGCAC 1 cut(s) 82
AlwI GGATC 1 cut(s) 239
AoxI GGCC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 65
AsiGI ACCGGT 2 cut(s) 56, 125
AspS9I GGNCC 2 cut(s) 128, 201
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 273
BciVI GTATCC 1 cut(s) 241
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 2 cut(s) 66, 148
BlsI GCNGC 2 cut(s) 67, 149
BmcAI AGTACT 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 128, 201
BmsI GCATC 1 cut(s) 4
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 56, 125
Bse118I RCCGGY 2 cut(s) 56, 125
Bse1I ACTGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 18, 123
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 203
BshTI ACCGGT 2 cut(s) 56, 125
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 2 cut(s) 57, 126
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 19, 124
BspPI GGATC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 56, 125
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 56, 125
BssMI GATC 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 27, 132
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstPAI GACNNNNGTC 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 132
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 203
Cfr10I RCCGGY 2 cut(s) 56, 125
Cfr13I GGNCC 2 cut(s) 128, 201
Csp6I GTAC 2 cut(s) 76, 123
CspAI ACCGGT 2 cut(s) 56, 125
CviJI RGCY 3 cut(s) 95, 203, 259
CviKI_1 RGCY 3 cut(s) 95, 203, 259
CviQI GTAC 2 cut(s) 76, 123
DdeI CTNAG 2 cut(s) 27, 132
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 132
FaiI YATR 4 cut(s) 53, 164, 224, 243
Fnu4HI GCNGC 2 cut(s) 66, 148
Fsp4HI GCNGC 2 cut(s) 66, 148
GluI GCNGC 2 cut(s) 66, 148
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 203
HapII CCGG 2 cut(s) 57, 126
HpaII CCGG 2 cut(s) 57, 126
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 13, 28
Hpy188III TCNNGA 2 cut(s) 131, 252
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 84, 197, 210, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 27, 132
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 4, 22
LpnPI CCDG 7 cut(s) 64, 70, 139, 144, 237, 247, 273
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 4
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 86
MnlI CCTC 2 cut(s) 127, 165
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 2 cut(s) 57, 126
Mva1269I GAATGC 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 1 cut(s) 244
PctI GAATGC 1 cut(s) 7
PinAI ACCGGT 2 cut(s) 56, 125
PkrI GCNGC 2 cut(s) 67, 149
PshAI GACNNNNGTC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 128, 201
RsaI GTAC 2 cut(s) 77, 124
RsaNI GTAC 2 cut(s) 76, 123
RseI CAYNNNNRTG 1 cut(s) 12
SatI GCNGC 2 cut(s) 66, 148
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 128, 201
ScaI AGTACT 1 cut(s) 77
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 12
SsiI CCGC 1 cut(s) 148
TaaI ACNGT 1 cut(s) 143
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 150
TseI GCWGC 1 cut(s) 65
VneI GTGCAC 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.