Rorug05G0526900

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000259
Physical Location & Seq
Reverse (-)
71572480 .. 71574746
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0526900.1

Sequence Viewer

Length: 396 bp
ATGACTTTCAAGAGAAGAAATGGCGGGCGCAACAAGCACGGCCGTGGCCACACCAAGTTCATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAAGCTGTCAAGAGGTTTCTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGTCCAGGAGGCTTGTGTTTATGAAGCCTACACTCTTCCTAAGCTGTATGCAAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTAGTGAGGGTTCGATCTAGGGAGAAGAGGAGGAGCCGTGAGCCCCCTCAGCGTTTCAGGCGCCGGGAGGATCAGCCTAGGCCTAGCGCACCAGGTGGACCTGGTCAGGCTCCACGCCCTGCCGCTGGAGTGGCAACCGCCCGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

131

Amino Acids

14.9

Weight (kDa)

10.92

Isoelectric Point (pI)

77.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 1 - 107 3.1e-54 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 306
AciI CCGC 5 cut(s) 24, 64, 78, 369, 384
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 2 cut(s) 40, 46
AcyI GRCGYC 1 cut(s) 307
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 3 cut(s) 159, 337, 346
AleI CACNNNNGTG 1 cut(s) 42
AluBI AGCT 3 cut(s) 104, 143, 199
AluI AGCT 3 cut(s) 104, 143, 199
AlwI GGATC 1 cut(s) 324
AoxI GGCC 3 cut(s) 40, 46, 326
ApeKI GCWGC 3 cut(s) 66, 87, 143
AspA2I CCTAGG 1 cut(s) 323
AspLEI GCGC 3 cut(s) 30, 309, 335
AspS9I GGNCC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 344
AvrII CCTAGG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 93
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 291
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 53, 74, 130
BceAI ACGGC 3 cut(s) 27, 55, 267
BciT130I CCWGG 3 cut(s) 161, 339, 348
BcnI CCSGG 1 cut(s) 311
BfaI CTAG 3 cut(s) 264, 324, 330
BfoI RGCGCY 1 cut(s) 310
BisI GCNGC 5 cut(s) 67, 79, 88, 144, 369
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 5 cut(s) 68, 80, 89, 145, 370
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 4 cut(s) 161, 311, 339, 348
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 281, 308, 357
BmrFI CCNGG 4 cut(s) 161, 311, 339, 348
BmsI GCATC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 2 cut(s) 195, 294
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 43, 323
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse21I CCTNAGG 1 cut(s) 93
BseBI CCWGG 3 cut(s) 161, 339, 348
BseDI CCNNGG 2 cut(s) 43, 323
BseGI GGATG 2 cut(s) 60, 160
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 289, 292
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 3 cut(s) 53, 74, 130
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 3 cut(s) 42, 48, 328
BshNI GGYRCC 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 371
BsnI GGCC 3 cut(s) 42, 48, 328
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 260, 316
BspACI CCGC 5 cut(s) 24, 64, 78, 369, 384
BspANI GGCC 3 cut(s) 42, 48, 328
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 281, 308, 357
BspPI GGATC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 43, 323
BssMI GATC 2 cut(s) 260, 316
BssNI GRCGYC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 3 cut(s) 161, 339, 348
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 195, 266
BstACI GRCGYC 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 26, 141
BstDEI CTNAG 3 cut(s) 93, 195, 294
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 60, 160
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 3 cut(s) 30, 309, 335
BstKTI GATC 2 cut(s) 263, 319
BstMBI GATC 2 cut(s) 260, 316
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 7 cut(s) 34, 75, 84, 87, 295, 304, 377
BstNI CCWGG 3 cut(s) 161, 339, 348
BstSCI CCNGG 4 cut(s) 159, 309, 337, 346
BstV1I GCAGC 3 cut(s) 53, 74, 130
BstZI CGGCCG 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 3 cut(s) 42, 48, 328
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 60, 160
Cac8I GCNNGC 2 cut(s) 26, 141
CfoI GCGC 3 cut(s) 30, 309, 335
Cfr13I GGNCC 1 cut(s) 344
CsiI ACCWGGT 2 cut(s) 337, 346
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 245, 393
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 3 cut(s) 93, 195, 294
DinI GGCGCC 1 cut(s) 308
DpnI GATC 2 cut(s) 262, 318
DpnII GATC 2 cut(s) 260, 316
DraIII CACNNNGTG 1 cut(s) 341
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 40, 46
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 195, 266
EarI CTCTTC 2 cut(s) 195, 266
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 344
Eco52I CGGCCG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 93
EcoRII CCWGG 3 cut(s) 159, 337, 346
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 308
EheI GGCGCC 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 2 cut(s) 248, 396
FaiI YATR 4 cut(s) 177, 204, 246, 394
FatI CATG 2 cut(s) 244, 392
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 5 cut(s) 67, 79, 88, 144, 369
FokI GGATG 2 cut(s) 47, 167
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 5 cut(s) 67, 79, 88, 144, 369
FspBI CTAG 3 cut(s) 264, 324, 330
GlaI GCGC 3 cut(s) 29, 308, 334
GluI GCNGC 5 cut(s) 67, 79, 88, 144, 369
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 3 cut(s) 42, 48, 328
HapII CCGG 1 cut(s) 310
HhaI GCGC 3 cut(s) 30, 309, 335
Hin1I GRCGYC 1 cut(s) 307
Hin1II CATG 2 cut(s) 248, 396
Hin6I GCGC 3 cut(s) 28, 307, 333
HinP1I GCGC 3 cut(s) 28, 307, 333
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 10, 109
Hpy8I GTNNAC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 206, 214
HpyF10VI GCNNNNNNNGC 7 cut(s) 34, 75, 84, 87, 295, 304, 377
HpyF3I CTNAG 3 cut(s) 93, 195, 294
Hsp92I GRCGYC 1 cut(s) 307
Hsp92II CATG 2 cut(s) 248, 396
HspAI GCGC 3 cut(s) 28, 307, 333
KasI GGCGCC 1 cut(s) 306
Kzo9I GATC 2 cut(s) 260, 316
LmnI GCTCC 3 cut(s) 74, 279, 361
Lsp1109I GCAGC 3 cut(s) 53, 74, 130
LweI GCATC 1 cut(s) 201
MabI ACCWGGT 2 cut(s) 337, 346
MaeI CTAG 3 cut(s) 264, 324, 330
MalI GATC 2 cut(s) 262, 318
MboI GATC 2 cut(s) 260, 316
MboII GAAGA 3 cut(s) 27, 182, 283
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 8 cut(s) 105, 117, 157, 246, 267, 270, 303, 307
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 42, 243
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 2 cut(s) 66, 371
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 4 cut(s) 161, 311, 339, 348
MvaI CCWGG 3 cut(s) 161, 339, 348
MwoI GCNNNNNNNGC 7 cut(s) 34, 75, 84, 87, 295, 304, 377
NarI GGCGCC 1 cut(s) 307
NciI CCSGG 1 cut(s) 311
NdeII GATC 2 cut(s) 260, 316
NlaIII CATG 2 cut(s) 248, 396
NlaIV GGNNCC 3 cut(s) 281, 308, 357
OliI CACNNNNGTG 1 cut(s) 42
PceI AGGCCT 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 5 cut(s) 68, 80, 89, 145, 370
PluTI GGCGCC 1 cut(s) 310
Psp6I CCWGG 3 cut(s) 159, 337, 346
PspGI CCWGG 3 cut(s) 159, 337, 346
PspN4I GGNNCC 3 cut(s) 281, 308, 357
PspPI GGNCC 1 cut(s) 344
PsrI GAACNNNNNNTAC 2 cut(s) 240, 272
PsyI GACNNNGTC 1 cut(s) 348
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 42, 243
SatI GCNGC 5 cut(s) 67, 79, 88, 144, 369
Sau3AI GATC 2 cut(s) 260, 316
Sau96I GGNCC 1 cut(s) 344
ScaI AGTACT 1 cut(s) 218
ScrFI CCNGG 4 cut(s) 161, 311, 339, 348
SduI GDGCHC 1 cut(s) 291
SetI ASST 6 cut(s) 106, 116, 145, 201, 343, 349
SexAI ACCWGGT 2 cut(s) 337, 346
SfaNI GCATC 1 cut(s) 201
SfoI GGCGCC 1 cut(s) 308
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 2 cut(s) 42, 243
SseBI AGGCCT 1 cut(s) 328
SsiI CCGC 5 cut(s) 24, 64, 78, 369, 384
SspDI GGCGCC 1 cut(s) 306
SspMI CTAG 3 cut(s) 264, 324, 330
StuI AGGCCT 1 cut(s) 328
StyD4I CCNGG 4 cut(s) 159, 309, 337, 346
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 259
TatI WGTACW 1 cut(s) 216
TauI GCSGC 2 cut(s) 81, 371
TseI GCWGC 3 cut(s) 66, 87, 143
TspDTI ATGAA 2 cut(s) 49, 192
Tth111I GACNNNGTC 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 323
XspI CTAG 3 cut(s) 264, 324, 330
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.