MD05G1110300.v1.1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000259
Physical Location & Seq
Reverse (-)
22688873 .. 22689379
507 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1110300.v1.1.491

Sequence Viewer

Length: 507 bp
ATGGGGTACTCTAGTAACCTTTTACTATGCATATTCTCCACAGCATTAATCTTAGCTGCTCATACCTCCATAGCCCGGAAAGTCGGTTATTATCCCCCTAACCCTCACCAAGACTTCGTCGATGAACACAACAGAGCTCGGGCAGCAGTTGGTGTCGGTCCGATCAAATGGAACGACACTGTAGCAGCCTATGCTCAGCAGTATGCCAATACAAGAGTGAGAGGGTGTGACATGGAGCACTCAGGAGGGCCTTATGGTGAGAACTTGGCTGAAGGCTATGGAGAAATGACCGGTGCTCAAGCCGTGAAGTTTTGGGTGACTGAGAAACCCAACTATAACTACGCCTCCAATAAGTGTGTTGGTGATGAATGCGGACATTATACTCAGGTGGTTTGGCGCAACTCGATTCATCTTGGATGTGCAAGGGTCAAGTGTGACAATAATTGGGTTTTTGTCATCTGCAGCTATGATCCTCCTGGTAACTATGAGGATGAACGTCCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

169

Amino Acids

18.77

Weight (kDa)

6.04

Isoelectric Point (pI)

21.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 40 - 156 1.7e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 75
AgeI ACCGGT 1 cut(s) 290
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 3 cut(s) 56, 137, 465
AluI AGCT 3 cut(s) 56, 137, 465
Alw21I GWGCWC 3 cut(s) 139, 240, 298
AlwI GGATC 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 4 cut(s) 56, 143, 185, 462
AseI ATTAAT 1 cut(s) 47
AsiGI ACCGGT 1 cut(s) 290
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 158, 248
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 4 cut(s) 98, 269, 328, 374
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 1 cut(s) 158
BaeI ACNNNNGTAYC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 3 cut(s) 139, 240, 298
BbvI GCAGC 4 cut(s) 43, 155, 197, 474
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 477
BcnI CCSGG 1 cut(s) 76
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 2 cut(s) 180, 460
BisI GCNGC 4 cut(s) 57, 144, 186, 463
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 4 cut(s) 58, 145, 187, 464
Bme1390I CCNGG 2 cut(s) 76, 477
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 158, 248
BmrFI CCNGG 2 cut(s) 76, 477
Bpu1102I GCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 290
BseBI CCWGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 422, 496
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 4 cut(s) 209, 255, 312, 398
BseXI GCAGC 4 cut(s) 43, 155, 197, 474
BshFI GGCC 1 cut(s) 250
BshTI ACCGGT 1 cut(s) 290
BsiHKAI GWGCWC 3 cut(s) 139, 240, 298
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 2 cut(s) 76, 291
BslI CCNNNNNNNGG 1 cut(s) 75
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 3 cut(s) 139, 240, 298
Bsp143I GATC 2 cut(s) 162, 469
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 4 cut(s) 208, 254, 313, 397
BspMAI CTGCAG 1 cut(s) 464
BspPI GGATC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
BssMI GATC 2 cut(s) 162, 469
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 191
BstDEI CTNAG 5 cut(s) 52, 195, 241, 321, 384
BstF5I GGATG 2 cut(s) 422, 496
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 2 cut(s) 165, 472
BstMBI GATC 2 cut(s) 162, 469
BstMWI GCNNNNNNNGC 2 cut(s) 143, 191
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 2 cut(s) 74, 475
BstSFI CTRYAG 2 cut(s) 180, 460
BstV1I GCAGC 4 cut(s) 43, 155, 197, 474
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 422, 496
BtsIMutI CAGTG 1 cut(s) 177
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 158, 248
CpoI CGGWCCG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 7
CspAI ACCGGT 1 cut(s) 290
CspI CGGWCCG 1 cut(s) 158
CviAII CATG 1 cut(s) 232
CviJI RGCY 9 cut(s) 56, 74, 137, 188, 250, 269, 276, 302, 465
CviKI_1 RGCY 9 cut(s) 56, 74, 137, 188, 250, 269, 276, 302, 465
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 5 cut(s) 52, 195, 241, 321, 384
DpnI GATC 2 cut(s) 164, 471
DpnII GATC 2 cut(s) 162, 469
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 475
EcoT22I ATGCAT 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 1 cut(s) 235
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 57, 144, 186, 463
FokI GGATG 2 cut(s) 429, 503
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 57, 144, 186, 463
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 398
GluI GCNGC 4 cut(s) 57, 144, 186, 463
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 76, 291
HhaI GCGC 1 cut(s) 399
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HinfI GANTC 1 cut(s) 406
HpaII CCGG 2 cut(s) 76, 291
HphI GGTGA 4 cut(s) 98, 269, 328, 374
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 243
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 3 cut(s) 30, 422, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 191
HpyF3I CTNAG 5 cut(s) 52, 195, 241, 321, 384
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 162, 469
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 6 cut(s) 89, 228, 304, 371, 462, 489
Lsp1109I GCAGC 4 cut(s) 43, 155, 197, 474
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 5 cut(s) 14, 227, 316, 434, 479
MalI GATC 2 cut(s) 164, 471
MboI GATC 2 cut(s) 162, 469
MhlI GDGCHC 3 cut(s) 139, 240, 298
MluCI AATT 1 cut(s) 442
MnlI CCTC 7 cut(s) 76, 114, 215, 239, 355, 481, 483
Mph1103I ATGCAT 1 cut(s) 32
MseI TTAA 1 cut(s) 47
MspI CCGG 2 cut(s) 76, 291
MspR9I CCNGG 2 cut(s) 76, 477
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 143, 191
NciI CCSGG 1 cut(s) 76
NdeII GATC 2 cut(s) 162, 469
NlaIII CATG 1 cut(s) 235
NmuCI GTSAC 3 cut(s) 227, 316, 434
NsiI ATGCAT 1 cut(s) 32
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 406
PflFI GACNNNGTC 1 cut(s) 116
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 4 cut(s) 58, 145, 187, 464
PshBI ATTAAT 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspPI GGNCC 2 cut(s) 158, 248
PstI CTGCAG 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
Rsr2I CGGWCCG 1 cut(s) 158
RsrII CGGWCCG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 4 cut(s) 57, 144, 186, 463
Sau3AI GATC 2 cut(s) 162, 469
Sau96I GGNCC 2 cut(s) 158, 248
ScrFI CCNGG 2 cut(s) 76, 477
SduI GDGCHC 3 cut(s) 139, 240, 298
SetI ASST 7 cut(s) 21, 58, 68, 139, 390, 467, 499
SfcI CTRYAG 2 cut(s) 180, 460
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 442
SsiI CCGC 1 cut(s) 372
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 74, 475
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 499
TaqI TCGA 2 cut(s) 120, 404
TaqII GACCGA 1 cut(s) 146
TasI AATT 1 cut(s) 442
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 3 cut(s) 227, 316, 434
TseI GCWGC 4 cut(s) 56, 143, 185, 462
Tsp45I GTSAC 3 cut(s) 227, 316, 434
TspDTI ATGAA 4 cut(s) 138, 381, 398, 507
TspRI CASTG 1 cut(s) 184
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 47
XspI CTAG 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.