Rmu_sc0016035.1_g000006

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016035.1
OG0000259
Physical Location & Seq
Reverse (-)
23357 .. 23962
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016035.1_g000006.1.cds

Sequence Viewer

Length: 606 bp
atggggtttagcaagcttttctttggtgtatgctgcttagcagtaatcgttatatttcatgtctctcaagctacagtaattaacaatcccaaccaaggcttccttgatgaagacaacaacaatcccaaccaaggcttcattgatgaacacaacaaagctcgagcagaggtcggtgttggtccaatgacatggaacaatcccaaccaaggcttcattgatgaacacaacaaagctcgagcagaggtcggtgttggtccaatcacatggaacaacacagtagcaatgtacgcacaaaagtatgccgattcaaaaattgagacctgcgaaatggagcattctggaggaccctatggcgagaacttggctgaaggttatggtgaaatgacgggtgcggaagctgtgaagtcttgggtgacgtcagagaagcctaactatgaccatgcctctaacacatgtgttaataatgaatgtttgctttatacacaagtggtttggcgcgattctgttaatcttggttgtgctagggtcaagtgtaaaaatgggcgggcgttggtagtttgtaactatgatcctcctggtaactatattggagagcgtccctattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

201

Amino Acids

22.19

Weight (kDa)

5.08

Isoelectric Point (pI)

18.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 329
AccII CGCG 1 cut(s) 498
AciI CCGC 2 cut(s) 392, 544
AclWI GGATC 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 95, 131, 206
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 1 cut(s) 309
AjnI CCWGG 1 cut(s) 574
AjuI GAANNNNNNNTTGG 6 cut(s) 83, 115, 119, 151, 194, 226
AluBI AGCT 5 cut(s) 16, 71, 158, 233, 398
AluI AGCT 5 cut(s) 16, 71, 158, 233, 398
Alw26I GTCTC 2 cut(s) 67, 311
AlwI GGATC 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 159, 234
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 3 cut(s) 179, 254, 344
AsuHPI GGTGA 2 cut(s) 389, 424
AvaI CYCGRG 2 cut(s) 159, 234
AvaII GGWCC 3 cut(s) 179, 254, 344
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 576
BcoDI GTCTC 2 cut(s) 67, 311
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 329
BisI GCNGC 1 cut(s) 34
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 3 cut(s) 179, 254, 344
BmeT110I CYCGRG 2 cut(s) 159, 234
BmgT120I GGNCC 3 cut(s) 179, 254, 344
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 94, 130, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 131, 206
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 3 cut(s) 94, 130, 205
BseLI CCNNNNNNNGG 3 cut(s) 95, 131, 206
BseMI GCAATG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 498
BsiHKCI CYCGRG 2 cut(s) 159, 234
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 3 cut(s) 95, 131, 206
BsmAI GTCTC 2 cut(s) 67, 311
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 2 cut(s) 159, 234
Bsp143I GATC 1 cut(s) 568
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 2 cut(s) 392, 544
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 94, 130, 205
BssMI GATC 1 cut(s) 568
BssNI GRCGYC 1 cut(s) 416
BssT1I CCWWGG 3 cut(s) 94, 130, 205
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 2 cut(s) 76, 277
BstACI GRCGYC 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 14, 546
BstDEI CTNAG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 1 cut(s) 571
BstMAI GTCTC 2 cut(s) 67, 311
BstMBI GATC 1 cut(s) 568
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 117
BstXI CCANNNNNNTGG 2 cut(s) 189, 264
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 2 cut(s) 14, 546
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 3 cut(s) 179, 254, 344
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 286
CviAII CATG 5 cut(s) 59, 189, 264, 440, 453
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 570
DpnII GATC 1 cut(s) 568
Eco130I CCWWGG 3 cut(s) 94, 130, 205
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 3 cut(s) 179, 254, 344
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 2 cut(s) 159, 234
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 574
EcoT14I CCWWGG 3 cut(s) 94, 130, 205
ErhI CCWWGG 3 cut(s) 94, 130, 205
FaeI CATG 5 cut(s) 62, 192, 267, 443, 456
FalI AAGNNNNNCTT 3 cut(s) 37, 87, 119
FaqI GGGAC 1 cut(s) 582
FatI CATG 5 cut(s) 58, 188, 263, 439, 452
FauI CCCGC 1 cut(s) 537
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 497
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 360
HgaI GACGC 1 cut(s) 584
HhaI GCGC 1 cut(s) 498
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 5 cut(s) 62, 192, 267, 443, 456
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 305, 500
HphI GGTGA 2 cut(s) 389, 424
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 2 cut(s) 76, 277
HpyCH4IV ACGT 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 416
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 5 cut(s) 62, 192, 267, 443, 456
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 1 cut(s) 568
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 324, 334, 561, 588
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 3 cut(s) 412, 560, 578
MalI GATC 1 cut(s) 570
MboI GATC 1 cut(s) 568
MboII GAAGA 1 cut(s) 122
MluCI AATT 2 cut(s) 78, 312
MnlI CCTC 5 cut(s) 160, 235, 335, 454, 582
MseI TTAA 3 cut(s) 81, 459, 507
MspR9I CCNGG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 1 cut(s) 568
NlaIII CATG 5 cut(s) 62, 192, 267, 443, 456
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 456
PaeR7I CTCGAG 2 cut(s) 159, 234
PciI ACATGT 1 cut(s) 452
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 305, 500
PkrI GCNGC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 344
PscI ACATGT 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 3 cut(s) 179, 254, 344
PspPPI RGGWCCY 1 cut(s) 344
PspXI VCTCGAGB 2 cut(s) 159, 234
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 3 cut(s) 81, 459, 507
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 568
Sau96I GGNCC 3 cut(s) 179, 254, 344
ScrFI CCNGG 1 cut(s) 576
SfcI CTRYAG 1 cut(s) 72
Sfr274I CTCGAG 2 cut(s) 159, 234
SinI GGWCC 3 cut(s) 179, 254, 344
SlaI CTCGAG 2 cut(s) 159, 234
SmlI CTYRAG 3 cut(s) 66, 159, 234
SmoI CTYRAG 3 cut(s) 66, 159, 234
Sse9I AATT 2 cut(s) 78, 312
SsiI CCGC 2 cut(s) 392, 544
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 3 cut(s) 94, 130, 205
TaaI ACNGT 2 cut(s) 76, 277
TaiI ACGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 160, 235
TasI AATT 2 cut(s) 78, 312
TfiI GAWTC 2 cut(s) 305, 500
Tru1I TTAA 3 cut(s) 81, 459, 507
Tru9I TTAA 3 cut(s) 81, 459, 507
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 7 cut(s) 47, 123, 127, 159, 202, 234, 480
VpaK11BI GGWCC 3 cut(s) 179, 254, 344
XceI RCATGY 1 cut(s) 456
XhoI CTCGAG 2 cut(s) 159, 234
XspI CTAG 1 cut(s) 522
ZraI GACGTC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.