Rroxscaffold_7G00215340

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000259
Physical Location & Seq
Forward (+)
65932026 .. 65932586
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215340.1

Sequence Viewer

Length: 561 bp
ATGTCCCATTACATACTGCATAGAGGAAAAAATATGGGGTTTAGCAAGCTTTTCTTTGGTGTATGCTGCTTAGCAGTAATCATTATATTTCATGTCTCTCAAGCTACAGTAATTAACAATCCCAACCAAGGCTTCATTGATGAACACAACAACAATCCCAACCAAGGCTTCATTGATGAACACAACAAAGCTCGAGCAGAGGTCGGTGTTGGTCCAATCACATGGAACAACACAGTAGCAATGTACGCACAAAAGTATGCCGATTCAAAAATTGAGACCTGCGAAATGGAGCATTCTGGAGGACCCTATGGCGAGAACTTGGCTGAAGGTTATGGTGAAATGACGGGTGCGCAAGCTGTGAAGTTTTGGGTGACAGAGAAGCCTAACTATGACCATGCCTCTAACAAATGTGTTAATGATGAATGTTTGCATTATACACAAGTGGTTTGGCGCGATTCTGTTCGTCTTGGTTGTGCTAGGGCCAAGTGTAAAAATGGGTGGGTGTTTGTAATTTGTAACTATGATCCTCCTGGTAACTATATTGGAGAGCGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

6.22

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 59 - 174 1.3e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 287
AccII CGCG 1 cut(s) 453
AclWI GGATC 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 128, 164
AgsI TTSAA 1 cut(s) 267
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 4 cut(s) 116, 148, 152, 184
AluBI AGCT 4 cut(s) 49, 104, 191, 356
AluI AGCT 4 cut(s) 49, 104, 191, 356
Alw26I GTCTC 2 cut(s) 100, 269
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 1 cut(s) 66
AspLEI GCGC 2 cut(s) 352, 453
AspS9I GGNCC 3 cut(s) 212, 302, 480
AsuHPI GGTGA 2 cut(s) 347, 382
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 2 cut(s) 212, 302
BbvI GCAGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 100, 269
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 287
BisI GCNGC 1 cut(s) 67
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 531
Bme18I GGWCC 2 cut(s) 212, 302
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 212, 302, 480
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 531
BpmI CTGGAG 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 127, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 164
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 2 cut(s) 127, 163
BseLI CCNNNNNNNGG 2 cut(s) 128, 164
BseMI GCAATG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 1 cut(s) 482
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 2 cut(s) 128, 164
BsmAI GTCTC 2 cut(s) 100, 269
BsmFI GGGAC 1 cut(s) 537
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 482
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 192
Bsp143I GATC 1 cut(s) 523
Bsp1720I GCTNAGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 482
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 127, 163
BssMI GATC 1 cut(s) 523
BssT1I CCWWGG 2 cut(s) 127, 163
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 109, 235
BstC8I GCNNGC 2 cut(s) 47, 354
BstDEI CTNAG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 453
BstHHI GCGC 2 cut(s) 352, 453
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 2 cut(s) 100, 269
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 529
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 482
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 47, 354
CfoI GCGC 2 cut(s) 352, 453
Cfr13I GGNCC 3 cut(s) 212, 302, 480
CseI GACGC 1 cut(s) 539
Csp6I GTAC 1 cut(s) 244
CviAII CATG 3 cut(s) 92, 222, 395
CviJI RGCY 9 cut(s) 49, 104, 132, 168, 191, 323, 356, 382, 482
CviKI_1 RGCY 9 cut(s) 49, 104, 132, 168, 191, 323, 356, 382, 482
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
Eco130I CCWWGG 2 cut(s) 127, 163
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 212, 302
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 2 cut(s) 127, 163
ErhI CCWWGG 2 cut(s) 127, 163
FaeI CATG 3 cut(s) 95, 225, 398
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 537
FatI CATG 3 cut(s) 91, 221, 394
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 477
FspI TGCGCA 1 cut(s) 351
GlaI GCGC 2 cut(s) 351, 452
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 482
HgaI GACGC 1 cut(s) 539
HhaI GCGC 2 cut(s) 352, 453
Hin1II CATG 3 cut(s) 95, 225, 398
Hin6I GCGC 2 cut(s) 350, 451
HinP1I GCGC 2 cut(s) 350, 451
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 263, 455
HphI GGTGA 2 cut(s) 347, 382
Hpy188III TCNNGA 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 2 cut(s) 109, 235
HpyCH4V TGCA 2 cut(s) 19, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 3 cut(s) 95, 225, 398
HspAI GCGC 2 cut(s) 350, 451
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 4 cut(s) 282, 292, 516, 543
Lsp1109I GCAGC 1 cut(s) 53
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 370, 515, 533
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MluCI AATT 3 cut(s) 111, 270, 510
MnlI CCTC 5 cut(s) 17, 193, 293, 409, 537
MseI TTAA 2 cut(s) 114, 414
MspR9I CCNGG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 531
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 523
NlaIII CATG 3 cut(s) 95, 225, 398
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 370
NsbI TGCGCA 1 cut(s) 351
PaeR7I CTCGAG 1 cut(s) 192
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 263, 455
PkrI GCNGC 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 3 cut(s) 212, 302, 480
PspPPI RGGWCCY 1 cut(s) 302
PspXI VCTCGAGB 1 cut(s) 192
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 114, 414
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 3 cut(s) 212, 302, 480
ScrFI CCNGG 1 cut(s) 531
SetI ASST 7 cut(s) 51, 106, 193, 204, 281, 331, 358
SfcI CTRYAG 1 cut(s) 105
Sfr274I CTCGAG 1 cut(s) 192
SinI GGWCC 2 cut(s) 212, 302
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 99, 192
SmoI CTYRAG 2 cut(s) 99, 192
Sse9I AATT 3 cut(s) 111, 270, 510
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 529
StyI CCWWGG 2 cut(s) 127, 163
TaaI ACNGT 2 cut(s) 109, 235
TaqI TCGA 1 cut(s) 193
TasI AATT 3 cut(s) 111, 270, 510
TfiI GAWTC 2 cut(s) 263, 455
Tru1I TTAA 2 cut(s) 114, 414
Tru9I TTAA 2 cut(s) 114, 414
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 6 cut(s) 80, 124, 156, 160, 192, 435
VpaK11BI GGWCC 2 cut(s) 212, 302
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.