Rroxscaffold_7G00213930

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000259
Physical Location & Seq
Reverse (-)
64386707 .. 64388063
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213930.1

Sequence Viewer

Length: 774 bp
ATGGGGTTCAACAAACAAAACTTAATAGCCGTATGCTCCATAGCTTTGATCCTAATTACCTTTGTCCCTCTAGCAAGTACAGTCGAAGACGACAGTGGATTCCTCAAAGCACACAATGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCATTGGAATAAAACCATAGCTGAGTATGCGCAAAATTATGCCAATAAAAGATCTGTAGACTGCGCAATGGAGCATTCAATGGGTCCTTATTCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACAGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTCAGATTGGGACCAGCGTCCTTACTAAACATACTATAGTGGCAATAATGGTCTATGAGTTTTGCTCCAAAAAGGGATCAAAATGGTTATTAATAATTGTCTACCTAAATGTTTATAAAGAGTCTGATGTTGGCCTTGATGAATCGCAAAAACCACATTGGCAGGTGACTATACGAGAACAAAAGGAGATTGCAACAGCTTCCGCAGAGTCAGTTGTTGGTAAAAGAAGGAAGAGGTTGAGTGAGATGTTAGCCTCTCCAAAGAAACTTCGATTGAGCCTTGCAATTGGCATGAAGAATCCTGACATTGAAAACATAAGGCTAATCACTGTGGCTTCAGCCAGGACTGTTAAGAATGATAAGGTAGGTAAGTTGATGGATAGTCAAAATAAGTGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

257

Amino Acids

28.84

Weight (kDa)

8.76

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 127 4.4e-12 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AarI CACCTGC 1 cut(s) 526
Acc16I TGCGCA 2 cut(s) 180, 214
Acc36I ACCTGC 1 cut(s) 526
AccI GTMKAC 2 cut(s) 207, 474
AciI CCGC 3 cut(s) 143, 364, 576
AclWI GGATC 2 cut(s) 43, 457
AcoI YGGCCR 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 3 cut(s) 79, 293, 340
AgeI ACCGGT 2 cut(s) 272, 341
AgsI TTSAA 3 cut(s) 10, 228, 683
AjnI CCWGG 1 cut(s) 713
AluBI AGCT 3 cut(s) 44, 170, 572
AluI AGCT 3 cut(s) 44, 170, 572
Alw21I GWGCWC 2 cut(s) 135, 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 43, 457
AoxI GGCC 2 cut(s) 505, 767
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 281
AseI ATTAAT 1 cut(s) 464
AsiGI ACCGGT 2 cut(s) 272, 341
AspLEI GCGC 2 cut(s) 181, 215
AspS9I GGNCC 3 cut(s) 233, 344, 384
AsuHPI GGTGA 2 cut(s) 287, 550
AvaII GGWCC 3 cut(s) 233, 344, 384
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 769
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 2 cut(s) 135, 302
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 742
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 204, 408
BfuAI ACCTGC 1 cut(s) 526
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 282, 364
BlsI GCNGC 2 cut(s) 283, 365
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 715
Bme18I GGWCC 3 cut(s) 233, 344, 384
BmgT120I GGNCC 3 cut(s) 233, 344, 384
BmiI GGNNCC 2 cut(s) 234, 385
BmrFI CCNGG 1 cut(s) 715
BoxI GACNNNNGTC 1 cut(s) 389
BpiI GAAGAC 2 cut(s) 93, 360
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 272, 341
Bse118I RCCGGY 2 cut(s) 272, 341
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 222, 249
BseBI CCWGG 1 cut(s) 715
BseMI GCAATG 2 cut(s) 222, 249
BseMII CTCAG 4 cut(s) 162, 234, 339, 389
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 2 cut(s) 507, 769
BshTI ACCGGT 2 cut(s) 272, 341
BsiHKAI GWGCWC 2 cut(s) 135, 302
BsiSI CCGG 2 cut(s) 273, 342
BslFI GGGAC 2 cut(s) 50, 397
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 50, 397
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 507, 769
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 135, 302
Bsp143I GATC 3 cut(s) 48, 200, 449
BspACI CCGC 3 cut(s) 143, 364, 576
BspANI GGCC 2 cut(s) 507, 769
BspCNI CTCAG 4 cut(s) 163, 235, 340, 388
BspLI GGNNCC 2 cut(s) 234, 385
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 2 cut(s) 43, 457
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 222, 249
BsrFI RCCGGY 2 cut(s) 272, 341
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 3 cut(s) 48, 200, 449
Bst2UI CCWGG 1 cut(s) 715
Bst4CI ACNGT 6 cut(s) 82, 95, 137, 359, 703, 721
Bst6I CTCTTC 1 cut(s) 599
BstDEI CTNAG 4 cut(s) 171, 243, 348, 375
BstHHI GCGC 2 cut(s) 181, 215
BstKTI GATC 3 cut(s) 51, 203, 452
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 48, 200, 449
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 715
BstPAI GACNNNNGTC 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 713
BstSFI CTRYAG 2 cut(s) 204, 408
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 2 cut(s) 507, 769
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 3 cut(s) 100, 146, 699
BveI ACCTGC 1 cut(s) 526
CfoI GCGC 2 cut(s) 181, 215
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 3 cut(s) 233, 344, 384
CseI GACGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 78, 292, 339
CspAI ACCGGT 2 cut(s) 272, 341
CspCI CAANNNNNGTGG 1 cut(s) 746
CviAII CATG 1 cut(s) 664
CviQI GTAC 3 cut(s) 78, 292, 339
DdeI CTNAG 4 cut(s) 171, 243, 348, 375
DpnI GATC 3 cut(s) 50, 202, 451
DpnII GATC 3 cut(s) 48, 200, 449
EaeI YGGCCR 1 cut(s) 767
Eam1104I CTCTTC 1 cut(s) 599
EarI CTCTTC 1 cut(s) 599
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 3 cut(s) 233, 344, 384
Eco57I CTGAAG 1 cut(s) 693
Eco81I CCTNAGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 713
FaeI CATG 1 cut(s) 667
FaqI GGGAC 2 cut(s) 50, 397
FatI CATG 1 cut(s) 663
FauI CCCGC 1 cut(s) 150
FblI GTMKAC 2 cut(s) 207, 474
Fnu4HI GCNGC 2 cut(s) 282, 364
Fsp4HI GCNGC 2 cut(s) 282, 364
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 2 cut(s) 180, 214
GlaI GCGC 2 cut(s) 180, 214
GluI GCNGC 2 cut(s) 282, 364
HaeIII GGCC 2 cut(s) 507, 769
HapII CCGG 2 cut(s) 273, 342
HgaI GACGC 1 cut(s) 379
HhaI GCGC 2 cut(s) 181, 215
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 2 cut(s) 179, 213
HinP1I GCGC 2 cut(s) 179, 213
HinfI GANTC 6 cut(s) 99, 121, 494, 515, 581, 670
HpaII CCGG 2 cut(s) 273, 342
HphI GGTGA 2 cut(s) 287, 550
Hpy166II GTNNAC 3 cut(s) 208, 300, 475
Hpy188I TCNGA 3 cut(s) 244, 378, 499
Hpy188III TCNNGA 2 cut(s) 347, 674
Hpy8I GTNNAC 3 cut(s) 208, 300, 475
HpyAV CCTTC 1 cut(s) 594
HpyCH4III ACNGT 6 cut(s) 82, 95, 137, 359, 703, 721
HpyCH4V TGCA 4 cut(s) 151, 300, 566, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 4 cut(s) 171, 243, 348, 375
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 2 cut(s) 179, 213
Kzo9I GATC 3 cut(s) 48, 200, 449
LmnI GCTCC 3 cut(s) 41, 220, 443
LpnPI CCDG 9 cut(s) 280, 286, 355, 360, 400, 521, 687, 700, 727
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 538
MalI GATC 3 cut(s) 50, 202, 451
MboI GATC 3 cut(s) 48, 200, 449
MboII GAAGA 4 cut(s) 98, 365, 616, 679
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 135, 302
MlsI TGGCCA 1 cut(s) 769
MluCI AATT 4 cut(s) 54, 184, 468, 657
MluNI TGGCCA 1 cut(s) 769
MlyI GAGTC 2 cut(s) 503, 590
MnlI CCTC 5 cut(s) 78, 113, 343, 600, 637
Mox20I TGGCCA 1 cut(s) 769
MscI TGGCCA 1 cut(s) 769
MseI TTAA 3 cut(s) 23, 464, 723
Msp20I TGGCCA 1 cut(s) 769
MspI CCGG 2 cut(s) 273, 342
MspR9I CCNGG 1 cut(s) 715
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 715
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 3 cut(s) 48, 200, 449
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 2 cut(s) 234, 385
NmuCI GTSAC 1 cut(s) 538
NsbI TGCGCA 2 cut(s) 180, 214
PaqCI CACCTGC 1 cut(s) 526
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 99, 121, 515, 670
PinAI ACCGGT 2 cut(s) 272, 341
PkrI GCNGC 2 cut(s) 283, 365
PleI GAGTC 2 cut(s) 502, 589
PpsI GAGTC 2 cut(s) 502, 589
PpuMI RGGWCCY 1 cut(s) 233
PshAI GACNNNNGTC 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 464
PsiI TTATAA 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 713
PspGI CCWGG 1 cut(s) 713
PspN4I GGNNCC 2 cut(s) 234, 385
PspPI GGNCC 3 cut(s) 233, 344, 384
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 3 cut(s) 79, 293, 340
RsaNI GTAC 3 cut(s) 78, 292, 339
SaqAI TTAA 3 cut(s) 23, 464, 723
SatI GCNGC 2 cut(s) 282, 364
Sau3AI GATC 3 cut(s) 48, 200, 449
Sau96I GGNCC 3 cut(s) 233, 344, 384
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 2 cut(s) 503, 590
ScrFI CCNGG 1 cut(s) 715
SduI GDGCHC 2 cut(s) 135, 302
SetI ASST 9 cut(s) 46, 62, 172, 480, 540, 574, 611, 738, 742
SfcI CTRYAG 2 cut(s) 204, 408
SinI GGWCC 3 cut(s) 233, 344, 384
Sse9I AATT 4 cut(s) 54, 184, 468, 657
SsiI CCGC 3 cut(s) 143, 364, 576
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 713
TaaI ACNGT 6 cut(s) 82, 95, 137, 359, 703, 721
TaqI TCGA 2 cut(s) 84, 643
TasI AATT 4 cut(s) 54, 184, 468, 657
TatI WGTACW 2 cut(s) 77, 291
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 4 cut(s) 99, 121, 515, 670
Tru1I TTAA 3 cut(s) 23, 464, 723
Tru9I TTAA 3 cut(s) 23, 464, 723
TscAI CASTG 3 cut(s) 100, 153, 706
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 2 cut(s) 528, 680
TspRI CASTG 3 cut(s) 100, 153, 706
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 3 cut(s) 233, 344, 384
VspI ATTAAT 1 cut(s) 464
XmiI GTMKAC 2 cut(s) 207, 474
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.