Rmu_sc0000391.1_g000016

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000391.1
OG0000259
Physical Location & Seq
Forward (+)
59708 .. 62917
3210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000391.1_g000016.1.cds

Sequence Viewer

Length: 561 bp
atggcatcctctagcagtgatatgcaccgtgtatggcgcagcaaggcggcgcagttggtgttttcgtacccgactggaaaactcagctccggcgactttgtggcttcatgcttccatgttttggctagcggcggtgcaccaccgcctgtggcggcgttctggtggctttccggccatgtagggaactgggtgaacctaagaattgttcgcccgccactgcaatggaataaaaccatagctcagtatgctaaaaattatgccaataaaagatctgtggactgcgcaatggagcattcgaatggtccttatgctgagaacattatgagtggtttgggtatggccggtgaagcagcgacaaagtactggtgcacagagaaagccgaatacgactacaacacaaataaatgtaccggtcctgaggaagacggttgtcgccactatactcaggttgttacgagggcaacaacccaacttggttgtgcaagggccaagtgcaaaaatggctatatgtttgtaacttgcacctatgatccttctacagattgggaccagcatccgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

186

Amino Acids

20.64

Weight (kDa)

8.39

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 283
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 6 cut(s) 47, 129, 132, 143, 152, 212
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 2 cut(s) 172, 339
AfaI GTAC 3 cut(s) 68, 362, 409
AfiI CCNNNNNNNGG 1 cut(s) 121
AgeI ACCGGT 1 cut(s) 410
AluBI AGCT 2 cut(s) 87, 239
AluI AGCT 2 cut(s) 87, 239
Alw21I GWGCWC 2 cut(s) 139, 371
Alw44I GTGCAC 2 cut(s) 135, 367
AlwI GGATC 1 cut(s) 524
AoxI GGCC 3 cut(s) 172, 339, 486
ApaLI GTGCAC 2 cut(s) 135, 367
ApeKI GCWGC 2 cut(s) 39, 350
AsiGI ACCGGT 1 cut(s) 410
AspLEI GCGC 3 cut(s) 39, 52, 284
AspS9I GGNCC 4 cut(s) 302, 413, 486, 547
AsuHPI GGTGA 2 cut(s) 202, 356
AsuII TTCGAA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 125
AvaII GGWCC 3 cut(s) 302, 413, 547
AxyI CCTNAGG 1 cut(s) 417
BaeGI GKGCMC 2 cut(s) 139, 371
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 139, 371
BbvI GCAGC 2 cut(s) 51, 362
BfaI CTAG 2 cut(s) 12, 126
BfmI CTRYAG 1 cut(s) 537
BglII AGATCT 1 cut(s) 269
BisI GCNGC 5 cut(s) 40, 48, 130, 153, 351
BlsI GCNGC 5 cut(s) 41, 49, 131, 154, 352
BmcAI AGTACT 1 cut(s) 362
Bme18I GGWCC 3 cut(s) 302, 413, 547
BmgT120I GGNCC 4 cut(s) 302, 413, 486, 547
BmiI GGNNCC 1 cut(s) 548
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 2 cut(s) 341, 410
Bse1I ACTGG 3 cut(s) 79, 191, 368
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 2 cut(s) 227, 291
BseGI GGATG 2 cut(s) 5, 553
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 2 cut(s) 227, 291
BseMII CTCAG 5 cut(s) 97, 254, 303, 408, 458
BseNI ACTGG 3 cut(s) 79, 191, 368
BseSI GKGCMC 2 cut(s) 139, 371
BseXI GCAGC 2 cut(s) 51, 362
BshFI GGCC 3 cut(s) 174, 341, 488
BshTI ACCGGT 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 139, 371
BsiSI CCGG 4 cut(s) 90, 171, 342, 411
BslI CCNNNNNNNGG 1 cut(s) 121
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 3 cut(s) 174, 341, 488
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 139, 371
Bsp143I GATC 2 cut(s) 269, 529
BspACI CCGC 6 cut(s) 47, 129, 132, 143, 152, 212
BspANI GGCC 3 cut(s) 174, 341, 488
BspCNI CTCAG 5 cut(s) 96, 253, 304, 409, 457
BspLI GGNNCC 1 cut(s) 548
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 1 cut(s) 524
BspT104I TTCGAA 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 227, 291
BsrFI RCCGGY 2 cut(s) 341, 410
BsrI ACTGG 3 cut(s) 79, 191, 368
BssAI RCCGGY 2 cut(s) 341, 410
BssMI GATC 2 cut(s) 269, 529
Bst4CI ACNGT 2 cut(s) 29, 428
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 127, 212
BstDEI CTNAG 6 cut(s) 83, 197, 240, 312, 417, 444
BstF5I GGATG 2 cut(s) 5, 553
BstHHI GCGC 3 cut(s) 39, 52, 284
BstKTI GATC 2 cut(s) 272, 532
BstMBI GATC 2 cut(s) 269, 529
BstMWI GCNNNNNNNGC 3 cut(s) 245, 347, 501
BstPAI GACNNNNGTC 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 2 cut(s) 139, 371
BstV1I GCAGC 2 cut(s) 51, 362
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 1 cut(s) 269
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 3 cut(s) 174, 341, 488
BtsCI GGATG 2 cut(s) 5, 553
BtsI GCAGTG 2 cut(s) 22, 215
BtsIMutI CAGTG 2 cut(s) 22, 215
Cac8I GCNNGC 2 cut(s) 127, 212
CfoI GCGC 3 cut(s) 39, 52, 284
Cfr10I RCCGGY 2 cut(s) 341, 410
Cfr13I GGNCC 4 cut(s) 302, 413, 486, 547
Csp6I GTAC 3 cut(s) 67, 361, 408
CspAI ACCGGT 1 cut(s) 410
CviAII CATG 3 cut(s) 108, 116, 176
CviQI GTAC 3 cut(s) 67, 361, 408
DdeI CTNAG 6 cut(s) 83, 197, 240, 312, 417, 444
DpnI GATC 2 cut(s) 271, 531
DpnII GATC 2 cut(s) 269, 529
EaeI YGGCCR 2 cut(s) 172, 339
Eco47I GGWCC 3 cut(s) 302, 413, 547
Eco81I CCTNAGG 1 cut(s) 417
FaeI CATG 3 cut(s) 111, 119, 179
FatI CATG 3 cut(s) 107, 115, 175
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 5 cut(s) 40, 48, 130, 153, 351
FokI GGATG 1 cut(s) 540
Fsp4HI GCNGC 5 cut(s) 40, 48, 130, 153, 351
FspBI CTAG 2 cut(s) 12, 126
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 3 cut(s) 38, 51, 283
GluI GCNGC 5 cut(s) 40, 48, 130, 153, 351
HaeIII GGCC 3 cut(s) 174, 341, 488
HapII CCGG 4 cut(s) 90, 171, 342, 411
HhaI GCGC 3 cut(s) 39, 52, 284
Hin1II CATG 3 cut(s) 111, 119, 179
Hin6I GCGC 3 cut(s) 37, 50, 282
HinP1I GCGC 3 cut(s) 37, 50, 282
HpaII CCGG 4 cut(s) 90, 171, 342, 411
HphI GGTGA 2 cut(s) 202, 356
Hpy166II GTNNAC 4 cut(s) 137, 193, 277, 369
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 4 cut(s) 137, 193, 277, 369
HpyAV CCTTC 1 cut(s) 543
HpyCH4III ACNGT 2 cut(s) 29, 428
HpyCH4V TGCA 7 cut(s) 25, 137, 220, 369, 482, 495, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 347, 501
HpyF3I CTNAG 6 cut(s) 83, 197, 240, 312, 417, 444
Hsp92II CATG 3 cut(s) 111, 119, 179
HspAI GCGC 3 cut(s) 37, 50, 282
Kzo9I GATC 2 cut(s) 269, 529
LmnI GCTCC 2 cut(s) 92, 289
Lsp1109I GCAGC 2 cut(s) 51, 362
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 12, 126
MaeIII GTNAC 2 cut(s) 451, 514
MalI GATC 2 cut(s) 271, 531
MboI GATC 2 cut(s) 269, 529
MboII GAAGA 1 cut(s) 434
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 139, 371
MluCI AATT 2 cut(s) 201, 253
MnlI CCTC 3 cut(s) 19, 412, 450
MslI CAYNNNNRTG 2 cut(s) 220, 297
MspI CCGG 4 cut(s) 90, 171, 342, 411
Mva1269I GAATGC 1 cut(s) 292
MwoI GCNNNNNNNGC 3 cut(s) 245, 347, 501
NdeII GATC 2 cut(s) 269, 529
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 111, 119, 179
NlaIV GGNNCC 1 cut(s) 548
NsbI TGCGCA 1 cut(s) 283
NspV TTCGAA 1 cut(s) 296
PctI GAATGC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 410
PkrI GCNGC 5 cut(s) 41, 49, 131, 154, 352
PshAI GACNNNNGTC 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 548
PspPI GGNCC 4 cut(s) 302, 413, 486, 547
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 3 cut(s) 68, 362, 409
RsaNI GTAC 3 cut(s) 67, 361, 408
RseI CAYNNNNRTG 2 cut(s) 220, 297
SatI GCNGC 5 cut(s) 40, 48, 130, 153, 351
Sau3AI GATC 2 cut(s) 269, 529
Sau96I GGNCC 4 cut(s) 302, 413, 486, 547
ScaI AGTACT 1 cut(s) 362
SduI GDGCHC 2 cut(s) 139, 371
SetI ASST 5 cut(s) 89, 198, 241, 450, 527
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 537
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 3 cut(s) 302, 413, 547
SmiMI CAYNNNNRTG 2 cut(s) 220, 297
Sse9I AATT 2 cut(s) 201, 253
SsiI CCGC 6 cut(s) 47, 129, 132, 143, 152, 212
SspMI CTAG 2 cut(s) 12, 126
TaaI ACNGT 2 cut(s) 29, 428
TaqI TCGA 1 cut(s) 296
TasI AATT 2 cut(s) 201, 253
TatI WGTACW 1 cut(s) 360
TauI GCSGC 3 cut(s) 50, 132, 155
TscAI CASTG 2 cut(s) 22, 222
TseI GCWGC 2 cut(s) 39, 350
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 2 cut(s) 22, 222
Van91I CCANNNNNTGG 1 cut(s) 121
VneI GTGCAC 2 cut(s) 135, 367
VpaK11BI GGWCC 3 cut(s) 302, 413, 547
XspI CTAG 2 cut(s) 12, 126
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.