Rh6CG035500

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000259
Physical Location & Seq
Forward (+)
3362132 .. 3362626
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG035500.1

Sequence Viewer

Length: 495 bp
ATGGGGTTCAACAAACAAAACTTAATAGCCGTATGCTCTACAGCTTTGATCCTAATTACTTATGTCCCTCTAGCAAGTACAGTCGAAGACGACAGTGGCTTCCTCAAAGCACACAACGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCAATGGAATAAAACCATAGCTGAGTATGCGCAAAATTATGCCAATAAAAGATCTGTGGACTGCGCAATGGAGCATTCAGATGCTCCTTATTCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACCGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGATGGTTGCCGCCACTACACTATTGTAGTTACGAGGATAACAACCCAACTTGGTTGTGCAAGGGCCAAGTGCAAAAATGGCGATATGTTTGTAACCTGCAACTATGATCCTTCTGGAGATTGGGACCAGCGTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

164

Amino Acids

18.34

Weight (kDa)

5.34

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 153 3.4e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 180, 214
Acc36I ACCTGC 1 cut(s) 458
AciI CCGC 2 cut(s) 143, 364
AclWI GGATC 2 cut(s) 43, 455
AfaI GTAC 3 cut(s) 79, 293, 340
AgeI ACCGGT 2 cut(s) 272, 341
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 2 cut(s) 44, 170
AluI AGCT 2 cut(s) 44, 170
Alw21I GWGCWC 2 cut(s) 135, 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 43, 455
AoxI GGCC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 281
AsiGI ACCGGT 2 cut(s) 272, 341
AspLEI GCGC 2 cut(s) 181, 215
AspS9I GGNCC 3 cut(s) 344, 417, 478
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 2 cut(s) 344, 478
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 135, 302
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 458
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 282, 364
BlsI GCNGC 2 cut(s) 283, 365
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 344, 478
BmgT120I GGNCC 3 cut(s) 344, 417, 478
BmiI GGNNCC 1 cut(s) 479
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 272, 341
Bse118I RCCGGY 2 cut(s) 272, 341
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 3 cut(s) 158, 222, 249
BseMI GCAATG 3 cut(s) 158, 222, 249
BseMII CTCAG 3 cut(s) 162, 234, 339
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 419
BshTI ACCGGT 2 cut(s) 272, 341
BsiHKAI GWGCWC 2 cut(s) 135, 302
BsiSI CCGG 2 cut(s) 273, 342
BslFI GGGAC 2 cut(s) 50, 491
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 50, 491
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 135, 302
Bsp143I GATC 3 cut(s) 48, 200, 460
BspACI CCGC 2 cut(s) 143, 364
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 3 cut(s) 163, 235, 340
BspLI GGNNCC 1 cut(s) 479
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 2 cut(s) 43, 455
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 158, 222, 249
BsrFI RCCGGY 2 cut(s) 272, 341
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 3 cut(s) 48, 200, 460
Bst4CI ACNGT 3 cut(s) 82, 95, 137
BstDEI CTNAG 3 cut(s) 171, 243, 348
BstHHI GCGC 2 cut(s) 181, 215
BstKTI GATC 3 cut(s) 51, 203, 463
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 48, 200, 460
BstMWI GCNNNNNNNGC 2 cut(s) 176, 432
BstPAI GACNNNNGTC 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 100, 146
BveI ACCTGC 1 cut(s) 458
CfoI GCGC 2 cut(s) 181, 215
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 3 cut(s) 344, 417, 478
CseI GACGC 1 cut(s) 473
Csp6I GTAC 3 cut(s) 78, 292, 339
CspAI ACCGGT 2 cut(s) 272, 341
CviJI RGCY 6 cut(s) 29, 44, 99, 170, 311, 419
CviKI_1 RGCY 6 cut(s) 29, 44, 99, 170, 311, 419
CviQI GTAC 3 cut(s) 78, 292, 339
DdeI CTNAG 3 cut(s) 171, 243, 348
DpnI GATC 3 cut(s) 50, 202, 462
DpnII GATC 3 cut(s) 48, 200, 460
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 344, 478
Eco81I CCTNAGG 1 cut(s) 348
FaiI YATR 8 cut(s) 34, 63, 167, 177, 189, 269, 440, 459
FaqI GGGAC 2 cut(s) 50, 491
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 282, 364
Fsp4HI GCNGC 2 cut(s) 282, 364
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 2 cut(s) 180, 214
GlaI GCGC 2 cut(s) 180, 214
GluI GCNGC 2 cut(s) 282, 364
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 273, 342
HgaI GACGC 1 cut(s) 473
HhaI GCGC 2 cut(s) 181, 215
Hin6I GCGC 2 cut(s) 179, 213
HinP1I GCGC 2 cut(s) 179, 213
HinfI GANTC 1 cut(s) 121
HpaII CCGG 2 cut(s) 273, 342
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 208, 300
Hpy188I TCNGA 2 cut(s) 229, 244
Hpy188III TCNNGA 2 cut(s) 347, 468
Hpy8I GTNNAC 2 cut(s) 208, 300
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 3 cut(s) 82, 95, 137
HpyCH4V TGCA 5 cut(s) 151, 300, 413, 426, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 432
HpyF3I CTNAG 3 cut(s) 171, 243, 348
HspAI GCGC 2 cut(s) 179, 213
Kzo9I GATC 3 cut(s) 48, 200, 460
LmnI GCTCC 2 cut(s) 220, 238
LpnPI CCDG 6 cut(s) 280, 286, 355, 360, 453, 463
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 382, 445
MalI GATC 3 cut(s) 50, 202, 462
MboI GATC 3 cut(s) 48, 200, 460
MboII GAAGA 2 cut(s) 98, 365
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 135, 302
MluCI AATT 2 cut(s) 54, 184
MnlI CCTC 4 cut(s) 78, 113, 343, 381
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 151, 228
MspI CCGG 2 cut(s) 273, 342
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 176, 432
NdeII GATC 3 cut(s) 48, 200, 460
NlaIV GGNNCC 1 cut(s) 479
NsbI TGCGCA 2 cut(s) 180, 214
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 121
PinAI ACCGGT 2 cut(s) 272, 341
PkrI GCNGC 2 cut(s) 283, 365
PshAI GACNNNNGTC 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 3 cut(s) 344, 417, 478
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 3 cut(s) 79, 293, 340
RsaNI GTAC 3 cut(s) 78, 292, 339
RseI CAYNNNNRTG 2 cut(s) 151, 228
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 282, 364
Sau3AI GATC 3 cut(s) 48, 200, 460
Sau96I GGNCC 3 cut(s) 344, 417, 478
ScaI AGTACT 1 cut(s) 293
SduI GDGCHC 2 cut(s) 135, 302
SetI ASST 3 cut(s) 46, 172, 452
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 344, 478
SmiMI CAYNNNNRTG 2 cut(s) 151, 228
Sse9I AATT 2 cut(s) 54, 184
SsiI CCGC 2 cut(s) 143, 364
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 82, 95, 137
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 54, 184
TatI WGTACW 2 cut(s) 77, 291
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 100, 153
TseI GCWGC 1 cut(s) 281
TspRI CASTG 2 cut(s) 100, 153
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 344, 478
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.