Rw6G003490

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000259
Physical Location & Seq
Forward (+)
5605060 .. 5605958
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003490.1

Sequence Viewer

Length: 516 bp
ATGGGGCTGATCACAAAACTTTTAGTAGCCACATGCTCCCTAGTTTTCATCCTAGCATCTCATGCTGCCCTAGCTCGTAAGGTCAGCAAGGGGATCCCCTCCGACCCTAGTGGTCACCAAGGCTTTGTTGACGAGCACAATGCTGCTAGAGCGGCGGTTGGTGTTGGTCCAATCACTTGGAACTACACCGTAGCTGCCTACGCTCAACACTACGCCAACACTCGAATCCACGGCTGCGACATGGTGCATTCCGAAGGGCCTTACGGCGAGAACTTGGCTGAGGGCTACGGTGAGATGACTGGCGCTCAAGCAGTGAAGTTTTGGGTGACTGAGAAGCCCAACTACGACTACACCTCCAACAAGTGTGTTGGGGATGAATGCGGGCATTATACTCAGGTGGTTTGGCGCAATTCGGTTCATCTGGGATGTGCAAGAGCCAAGTGCACCAATGGGTGGGTGTTTGTGATCTGCAGCTATGATCCTCCTGGGAACTATGAGGATGAACGTCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

171

Amino Acids

18.69

Weight (kDa)

6.21

Isoelectric Point (pI)

22.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 43 - 159 2.2e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 152
AciI CCGC 3 cut(s) 152, 155, 381
AclWI GGATC 3 cut(s) 88, 101, 473
AfiI CCNNNNNNNGG 1 cut(s) 453
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 3 cut(s) 74, 194, 474
AluI AGCT 3 cut(s) 74, 194, 474
Alw21I GWGCWC 2 cut(s) 138, 446
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 3 cut(s) 88, 101, 473
AoxI GGCC 1 cut(s) 257
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 5 cut(s) 65, 143, 194, 234, 471
AspLEI GCGC 2 cut(s) 305, 408
AspS9I GGNCC 2 cut(s) 167, 257
AsuHPI GGTGA 3 cut(s) 107, 302, 337
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 93
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
Bbv12I GWGCWC 2 cut(s) 138, 446
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 5 cut(s) 52, 130, 181, 221, 483
BceAI ACGGC 2 cut(s) 247, 280
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 1 cut(s) 9
BfaI CTAG 6 cut(s) 41, 53, 71, 108, 147, 514
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 306
BisI GCNGC 6 cut(s) 66, 144, 153, 195, 235, 472
BlsI GCNGC 6 cut(s) 67, 145, 154, 196, 236, 473
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 167, 257
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 118, 229, 485
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 3 cut(s) 118, 229, 485
BseGI GGATG 4 cut(s) 48, 379, 431, 505
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMII CTCAG 3 cut(s) 270, 321, 407
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 5 cut(s) 52, 130, 181, 221, 483
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 138, 446
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 492
BsmI GAATGC 2 cut(s) 247, 383
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 138, 446
Bsp143I GATC 4 cut(s) 9, 93, 465, 478
BspACI CCGC 3 cut(s) 152, 155, 381
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 3 cut(s) 271, 322, 406
BspLI GGNNCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 473
BspPI GGATC 3 cut(s) 88, 101, 473
BsrBI CCGCTC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 118, 229, 485
BssMI GATC 4 cut(s) 9, 93, 465, 478
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 190, 290
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 3 cut(s) 279, 330, 393
BstDSI CCRYGG 1 cut(s) 229
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 4 cut(s) 48, 379, 431, 505
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 2 cut(s) 305, 408
BstKTI GATC 4 cut(s) 12, 96, 468, 481
BstMBI GATC 4 cut(s) 9, 93, 465, 478
BstMWI GCNNNNNNNGC 5 cut(s) 62, 71, 149, 152, 200
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 469
BstSLI GKGCMC 1 cut(s) 446
BstV1I GCAGC 5 cut(s) 52, 130, 181, 221, 483
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 4 cut(s) 48, 379, 431, 505
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 2 cut(s) 305, 408
Cfr13I GGNCC 2 cut(s) 167, 257
CviAII CATG 3 cut(s) 33, 62, 241
DdeI CTNAG 3 cut(s) 279, 330, 393
DpnI GATC 4 cut(s) 11, 95, 467, 480
DpnII GATC 4 cut(s) 9, 93, 465, 478
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 3 cut(s) 36, 65, 244
FaiI YATR 6 cut(s) 34, 63, 242, 390, 477, 495
FaqI GGGAC 1 cut(s) 492
FatI CATG 3 cut(s) 32, 61, 240
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 6 cut(s) 66, 144, 153, 195, 235, 472
FokI GGATG 4 cut(s) 35, 386, 438, 512
Fsp4HI GCNGC 6 cut(s) 66, 144, 153, 195, 235, 472
FspBI CTAG 6 cut(s) 41, 53, 71, 108, 147, 514
GlaI GCGC 2 cut(s) 304, 407
GluI GCNGC 6 cut(s) 66, 144, 153, 195, 235, 472
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 1 cut(s) 259
HhaI GCGC 2 cut(s) 305, 408
Hin1II CATG 3 cut(s) 36, 65, 244
Hin6I GCGC 2 cut(s) 303, 406
HinP1I GCGC 2 cut(s) 303, 406
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 225
HphI GGTGA 3 cut(s) 107, 302, 337
Hpy166II GTNNAC 2 cut(s) 130, 444
Hpy188I TCNGA 2 cut(s) 103, 253
Hpy8I GTNNAC 2 cut(s) 130, 444
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 2 cut(s) 190, 290
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 247, 431, 444, 471
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 71, 149, 152, 200
HpyF3I CTNAG 3 cut(s) 279, 330, 393
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 3 cut(s) 36, 65, 244
HspAI GCGC 2 cut(s) 303, 406
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 4 cut(s) 9, 93, 465, 478
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 285, 380, 407, 471, 498
Lsp1109I GCAGC 5 cut(s) 52, 130, 181, 221, 483
LweI GCATC 1 cut(s) 65
MaeI CTAG 6 cut(s) 41, 53, 71, 108, 147, 514
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 2 cut(s) 113, 325
MalI GATC 4 cut(s) 11, 95, 467, 480
MbiI CCGCTC 1 cut(s) 152
MboI GATC 4 cut(s) 9, 93, 465, 478
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 138, 446
MluCI AATT 1 cut(s) 409
MmeI TCCRAC 2 cut(s) 126, 381
MnlI CCTC 5 cut(s) 109, 274, 364, 490, 492
MspR9I CCNGG 1 cut(s) 486
Mva1269I GAATGC 2 cut(s) 247, 383
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 5 cut(s) 62, 71, 149, 152, 200
NdeII GATC 4 cut(s) 9, 93, 465, 478
NlaIII CATG 3 cut(s) 36, 65, 244
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 2 cut(s) 113, 325
NspI RCATGY 1 cut(s) 36
PctI GAATGC 2 cut(s) 247, 383
PfeI GAWTC 1 cut(s) 225
PflMI CCANNNNNTGG 1 cut(s) 453
PkrI GCNGC 6 cut(s) 67, 145, 154, 196, 236, 473
Psp6I CCWGG 1 cut(s) 484
PspEI GGTNACC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 2 cut(s) 167, 257
PstI CTGCAG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 93
SatI GCNGC 6 cut(s) 66, 144, 153, 195, 235, 472
Sau3AI GATC 4 cut(s) 9, 93, 465, 478
Sau96I GGNCC 2 cut(s) 167, 257
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 2 cut(s) 138, 446
SetI ASST 7 cut(s) 76, 84, 196, 356, 399, 476, 508
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 1 cut(s) 409
SsiI CCGC 3 cut(s) 152, 155, 381
SspMI CTAG 6 cut(s) 41, 53, 71, 108, 147, 514
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 190, 290
TaiI ACGT 1 cut(s) 508
TaqI TCGA 1 cut(s) 223
TasI AATT 1 cut(s) 409
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 225
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 2 cut(s) 113, 325
TseI GCWGC 5 cut(s) 65, 143, 194, 234, 471
Tsp45I GTSAC 2 cut(s) 113, 325
TspDTI ATGAA 4 cut(s) 37, 390, 407, 516
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 453
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 167
XceI RCATGY 1 cut(s) 36
XspI CTAG 6 cut(s) 41, 53, 71, 108, 147, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.