Rmu_sc0000147.1_g000081

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000147.1
OG0000259
Physical Location & Seq
Reverse (-)
357912 .. 359048
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000147.1_g000081.1.cds

Sequence Viewer

Length: 399 bp
atggagcattcgaatggtccttatgctgagaacattgcgagtggtttgggtatgaccggtgaagcagcgacaaagtactggtgcacagagaaagccgaatacgactacaacacaaataaatgtaccggtcctgaggaagccggttgtcgccactacactcaggtgactatacgagaacttaaggagattggaacagcttccgcagagtcagttgttggtaaaagaaggaagaggttgagtgagatgtcagcctctccaaagaaacttcgattgagccttacaatgggcatgaagaatcttgatattgaaaacataaggctgatcactgtggatctggcggggactgttaagaatgataagataggtaagtcgatggatagtcaaaataagtggccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

132

Amino Acids

14.65

Weight (kDa)

8.74

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 338
AclWI GGATC 1 cut(s) 339
AcoI YGGCCR 1 cut(s) 392
AfaI GTAC 2 cut(s) 77, 124
AfiI CCNNNNNNNGG 1 cut(s) 283
AflII CTTAAG 1 cut(s) 179
AgeI ACCGGT 2 cut(s) 56, 125
AgsI TTSAA 1 cut(s) 308
AleI CACNNNNGTG 1 cut(s) 161
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 86
Alw44I GTGCAC 1 cut(s) 82
AlwI GGATC 1 cut(s) 339
AoxI GGCC 1 cut(s) 392
ApaLI GTGCAC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 65
AsiGI ACCGGT 2 cut(s) 56, 125
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 17, 128
AsuHPI GGTGA 2 cut(s) 71, 175
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 2 cut(s) 17, 128
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 367
BclI TGATCA 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 77
Bme18I GGWCC 2 cut(s) 17, 128
BmgT120I GGNCC 2 cut(s) 17, 128
Bpu14I TTCGAA 1 cut(s) 11
BsaWI WCCGGW 2 cut(s) 56, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 3 cut(s) 56, 125, 140
Bse1I ACTGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 18, 123, 173
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 394
BshTI ACCGGT 2 cut(s) 56, 125
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 3 cut(s) 57, 126, 141
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 394
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 321, 331
BspACI CCGC 2 cut(s) 201, 338
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 3 cut(s) 19, 124, 172
BspPI GGATC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 11
BspTI CTTAAG 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 56, 125, 140
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 3 cut(s) 56, 125, 140
BssMI GATC 2 cut(s) 321, 331
Bst4CI ACNGT 2 cut(s) 328, 346
Bst6I CTCTTC 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 27, 132, 159
BstKTI GATC 2 cut(s) 324, 334
BstMBI GATC 2 cut(s) 321, 331
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 324
Cfr10I RCCGGY 3 cut(s) 56, 125, 140
Cfr13I GGNCC 2 cut(s) 17, 128
Csp6I GTAC 2 cut(s) 76, 123
CspAI ACCGGT 2 cut(s) 56, 125
CspCI CAANNNNNGTGG 1 cut(s) 371
CviAII CATG 1 cut(s) 289
CviJI RGCY 7 cut(s) 95, 140, 197, 251, 276, 319, 394
CviKI_1 RGCY 7 cut(s) 95, 140, 197, 251, 276, 319, 394
CviQI GTAC 2 cut(s) 76, 123
DdeI CTNAG 3 cut(s) 27, 132, 159
DpnI GATC 2 cut(s) 323, 333
DpnII GATC 2 cut(s) 321, 331
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 17, 128
Eco81I CCTNAGG 1 cut(s) 132
FaeI CATG 1 cut(s) 292
FaiI YATR 6 cut(s) 24, 53, 170, 290, 314, 397
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 331
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 394
HapII CCGG 3 cut(s) 57, 126, 141
Hin1II CATG 1 cut(s) 292
HinfI GANTC 2 cut(s) 206, 295
HpaII CCGG 3 cut(s) 57, 126, 141
HphI GGTGA 2 cut(s) 71, 175
Hpy166II GTNNAC 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 131, 299
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 2 cut(s) 328, 346
HpyCH4V TGCA 1 cut(s) 84
HpyF3I CTNAG 3 cut(s) 27, 132, 159
Hsp92II CATG 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 321, 331
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 64, 70, 139, 144, 146, 154, 320
Lsp1109I GCAGC 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 323, 333
MboI GATC 2 cut(s) 321, 331
MboII GAAGA 2 cut(s) 241, 304
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 394
MluNI TGGCCA 1 cut(s) 394
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 3 cut(s) 127, 225, 262
Mox20I TGGCCA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 196
MscI TGGCCA 1 cut(s) 394
MseI TTAA 2 cut(s) 180, 348
MslI CAYNNNNRTG 2 cut(s) 12, 161
Msp20I TGGCCA 1 cut(s) 394
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 3 cut(s) 57, 126, 141
Mva1269I GAATGC 1 cut(s) 7
NdeII GATC 2 cut(s) 321, 331
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 163
NspV TTCGAA 1 cut(s) 11
OliI CACNNNNGTG 1 cut(s) 161
PctI GAATGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 295
PinAI ACCGGT 2 cut(s) 56, 125
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 17, 128
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 2 cut(s) 77, 124
RsaNI GTAC 2 cut(s) 76, 123
RseI CAYNNNNRTG 2 cut(s) 12, 161
SaqAI TTAA 2 cut(s) 180, 348
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 321, 331
Sau96I GGNCC 2 cut(s) 17, 128
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 86
SetI ASST 4 cut(s) 165, 199, 236, 367
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 2 cut(s) 17, 128
SmiMI CAYNNNNRTG 2 cut(s) 12, 161
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 2 cut(s) 201, 338
TaaI ACNGT 2 cut(s) 328, 346
TaqI TCGA 3 cut(s) 11, 268, 371
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 180, 348
Tru9I TTAA 2 cut(s) 180, 348
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 305
TspRI CASTG 1 cut(s) 331
Vha464I CTTAAG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 17, 128
XmnI GAANNNNTTC 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.