Rroxscaffold_7G00213920

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000259
Physical Location & Seq
Reverse (-)
64382051 .. 64384672
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213920.1

Sequence Viewer

Length: 636 bp
ATGTGGAAGAATATTGTGATACCACCATCGGAACCCGACCTAGCTCGCTGCTGCCGAGCCTCAATTCCCAAAGGACAACGAGCAAGTACAGTCGAAGACGACAGTGGCTTCCTCAAAGCACACAATGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCAATGGAATAACACCATAGCTGAGTATGCGCAAAATTATGCCAATAAAAGATCTGTGGACTGCGCAATGGAGCATTCAAAAGGTCCTTATTCTGAGAACATTGCGAGTGGTTTGGATATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACAGAGAAAGCTGAATACGACTATAATACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTCAGGTAGTTACGAGGGCAACAACCCAACTTGGTTGTGCAAGGGCCAAGTGCAAAAATGGTGATATGTTTGTAACCTGCAACTATGATCCTTCTACAGATTGGGACCAGCCTTCCCCACTATGCATCTTCATCGTTGGCTCATATAAACAACGCCACCAGTCCCTGTGGAAGAATATTGTGATACCACCATCAAAACCCAGCCTAACTGCTGCTCTGCCAGAGCCTCAATTCCCAAAGGACAACAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

211

Amino Acids

23.68

Weight (kDa)

6.93

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 38 - 156 1.6e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
Acc16I TGCGCA 2 cut(s) 189, 223
Acc36I ACCTGC 1 cut(s) 467
AciI CCGC 2 cut(s) 152, 373
AclWI GGATC 1 cut(s) 464
AfaI GTAC 3 cut(s) 88, 302, 349
AgeI ACCGGT 2 cut(s) 281, 350
AgsI TTSAA 1 cut(s) 237
AluBI AGCT 3 cut(s) 44, 179, 320
AluI AGCT 3 cut(s) 44, 179, 320
Alw21I GWGCWC 2 cut(s) 144, 311
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 307
AlwI GGATC 1 cut(s) 464
AlwNI CAGNNNCTG 1 cut(s) 547
AoxI GGCC 1 cut(s) 426
ApaLI GTGCAC 1 cut(s) 307
ApeKI GCWGC 4 cut(s) 48, 51, 290, 593
AsiGI ACCGGT 2 cut(s) 281, 350
AspLEI GCGC 2 cut(s) 190, 224
AspS9I GGNCC 4 cut(s) 242, 353, 426, 487
AsuHPI GGTGA 2 cut(s) 296, 455
AvaII GGWCC 3 cut(s) 242, 353, 487
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 102, 369
Bbv12I GWGCWC 2 cut(s) 144, 311
BbvI GCAGC 4 cut(s) 35, 38, 302, 580
BccI CCATC 2 cut(s) 34, 580
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 467
BglII AGATCT 1 cut(s) 209
BisI GCNGC 5 cut(s) 49, 52, 291, 373, 594
BlsI GCNGC 5 cut(s) 50, 53, 292, 374, 595
BmcAI AGTACT 1 cut(s) 302
Bme18I GGWCC 3 cut(s) 242, 353, 487
BmgT120I GGNCC 4 cut(s) 242, 353, 426, 487
BmiI GGNNCC 2 cut(s) 33, 488
BmsI GCATC 1 cut(s) 516
BpiI GAAGAC 2 cut(s) 102, 369
BsaI GGTCTC 1 cut(s) 152
BsaWI WCCGGW 2 cut(s) 281, 350
Bse118I RCCGGY 2 cut(s) 281, 350
Bse1I ACTGG 2 cut(s) 308, 541
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 3 cut(s) 167, 231, 258
BseMI GCAATG 3 cut(s) 167, 231, 258
BseMII CTCAG 4 cut(s) 171, 243, 348, 398
BseNI ACTGG 2 cut(s) 308, 541
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 4 cut(s) 35, 38, 302, 580
BseYI CCCAGC 1 cut(s) 581
BshFI GGCC 1 cut(s) 428
BshTI ACCGGT 2 cut(s) 281, 350
BsiHKAI GWGCWC 2 cut(s) 144, 311
BsiSI CCGG 2 cut(s) 282, 351
BslFI GGGAC 2 cut(s) 500, 529
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 500, 529
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 428
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 144, 311
Bsp143I GATC 2 cut(s) 209, 469
BspACI CCGC 2 cut(s) 152, 373
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 4 cut(s) 172, 244, 349, 397
BspLI GGNNCC 2 cut(s) 33, 488
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 3 cut(s) 167, 231, 258
BsrFI RCCGGY 2 cut(s) 281, 350
BsrI ACTGG 2 cut(s) 308, 541
BssAI RCCGGY 2 cut(s) 281, 350
BssMI GATC 2 cut(s) 209, 469
Bst4CI ACNGT 4 cut(s) 91, 104, 146, 368
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 4 cut(s) 180, 252, 357, 384
BstHHI GCGC 2 cut(s) 190, 224
BstKTI GATC 2 cut(s) 212, 472
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 209, 469
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 4 cut(s) 35, 38, 302, 580
BstV2I GAAGAC 2 cut(s) 102, 369
BstX2I RGATCY 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 162
BstYI RGATCY 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 109, 155
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 547
CfoI GCGC 2 cut(s) 190, 224
Cfr10I RCCGGY 2 cut(s) 281, 350
Cfr13I GGNCC 4 cut(s) 242, 353, 426, 487
Csp6I GTAC 3 cut(s) 87, 301, 348
CspAI ACCGGT 2 cut(s) 281, 350
CviQI GTAC 3 cut(s) 87, 301, 348
DdeI CTNAG 4 cut(s) 180, 252, 357, 384
DpnI GATC 2 cut(s) 211, 471
DpnII GATC 2 cut(s) 209, 469
DrdI GACNNNNNNGTC 1 cut(s) 629
DseDI GACNNNNNNGTC 1 cut(s) 629
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 3 cut(s) 242, 353, 487
Eco81I CCTNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 509
FaqI GGGAC 2 cut(s) 500, 529
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 49, 52, 291, 373, 594
Fsp4HI GCNGC 5 cut(s) 49, 52, 291, 373, 594
FspBI CTAG 1 cut(s) 41
FspI TGCGCA 2 cut(s) 189, 223
GlaI GCGC 2 cut(s) 189, 223
GluI GCNGC 5 cut(s) 49, 52, 291, 373, 594
GsaI CCCAGC 1 cut(s) 585
HaeIII GGCC 1 cut(s) 428
HapII CCGG 2 cut(s) 282, 351
HhaI GCGC 2 cut(s) 190, 224
Hin6I GCGC 2 cut(s) 188, 222
HinP1I GCGC 2 cut(s) 188, 222
HinfI GANTC 1 cut(s) 130
HpaII CCGG 2 cut(s) 282, 351
HphI GGTGA 2 cut(s) 296, 455
Hpy166II GTNNAC 2 cut(s) 217, 309
Hpy188I TCNGA 3 cut(s) 31, 253, 635
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 2 cut(s) 217, 309
HpyAV CCTTC 2 cut(s) 483, 504
HpyCH4III ACNGT 4 cut(s) 91, 104, 146, 368
HpyCH4V TGCA 6 cut(s) 160, 309, 422, 435, 462, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 4 cut(s) 180, 252, 357, 384
HspAI GCGC 2 cut(s) 188, 222
Kzo9I GATC 2 cut(s) 209, 469
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 4 cut(s) 35, 38, 302, 580
LweI GCATC 1 cut(s) 516
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 391, 454
MalI GATC 2 cut(s) 211, 471
MboI GATC 2 cut(s) 209, 469
MboII GAAGA 5 cut(s) 19, 107, 374, 502, 565
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 144, 311
MluCI AATT 3 cut(s) 63, 193, 611
MnlI CCTC 5 cut(s) 70, 122, 352, 390, 618
Mph1103I ATGCAT 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 2 cut(s) 282, 351
Mva1269I GAATGC 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 2 cut(s) 209, 469
NlaIV GGNNCC 2 cut(s) 33, 488
NmeAIII GCCGAG 1 cut(s) 80
NsbI TGCGCA 2 cut(s) 189, 223
NsiI ATGCAT 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 130
PinAI ACCGGT 2 cut(s) 281, 350
PkrI GCNGC 5 cut(s) 50, 53, 292, 374, 595
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 33, 488
PspPI GGNCC 4 cut(s) 242, 353, 426, 487
PspPPI RGGWCCY 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 3 cut(s) 88, 302, 349
RsaNI GTAC 3 cut(s) 87, 301, 348
RseI CAYNNNNRTG 1 cut(s) 160
SatI GCNGC 5 cut(s) 49, 52, 291, 373, 594
Sau3AI GATC 2 cut(s) 209, 469
Sau96I GGNCC 4 cut(s) 242, 353, 426, 487
ScaI AGTACT 1 cut(s) 302
SduI GDGCHC 2 cut(s) 144, 311
SetI ASST 8 cut(s) 42, 46, 181, 244, 322, 390, 461, 633
SfaNI GCATC 1 cut(s) 516
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 242, 353, 487
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 3 cut(s) 63, 193, 611
SsiI CCGC 2 cut(s) 152, 373
SspI AATATT 2 cut(s) 13, 559
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 4 cut(s) 91, 104, 146, 368
TaqI TCGA 1 cut(s) 93
TasI AATT 3 cut(s) 63, 193, 611
TatI WGTACW 2 cut(s) 86, 300
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 2 cut(s) 109, 162
TseI GCWGC 4 cut(s) 48, 51, 290, 593
TspDTI ATGAA 1 cut(s) 502
TspRI CASTG 2 cut(s) 109, 162
VneI GTGCAC 1 cut(s) 307
VpaK11BI GGWCC 3 cut(s) 242, 353, 487
XspI CTAG 1 cut(s) 41
ZrmI AGTACT 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.