Rroxscaffold_7G00213880

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000259
Physical Location & Seq
Reverse (-)
64320267 .. 64321507
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213880.1

Sequence Viewer

Length: 633 bp
ATGGGGTTCAACAAACAAAACTTAATAGCCGTATGCTCCACAGCTTTGATCCTAATTACTTATGTCCCTCTAGCAAGTACAGTCGAAGACGACAGTGGCTTCCTCAAAGCACACAATGAGATTCGCAAAGAGCATGGTCTCCCGCCACTGCAATGGAATAAAACCATAGCTGAGTATGCGCAAAATTATGCCAATAAAAGATCTGTGGATTGCGCAATGGAGCATTCAAAAGGTCCTTATTCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACAGAGAAAGCTGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGTCGCCACTACACTCAGATTGGGATCAGCGTCCTTACTAAACATACCATAGATGCAATAATGGTCTATGAGTTTTGCTCCAACAAGGGATATTCAAAATGGCACCTTCTTGCAGCAAAAACCACGTTGGCAGGTGACTATATGAGAGCTGAAGAAGATTGCGACAGCTTTCGCATAGTCAGTTGTTGGTACAAGGAGGAAGAGGTTGAGTCAGATGTCAACCTCTCTAAAGAAACTGCGATTGAGCCTTGCAATGAGCTTGAAGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

210

Amino Acids

23.63

Weight (kDa)

4.89

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 127 1.4e-12 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 482
Acc16I TGCGCA 2 cut(s) 180, 214
Acc36I ACCTGC 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 462
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 43, 392
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 4 cut(s) 79, 293, 340, 551
AgeI ACCGGT 2 cut(s) 272, 341
AgsI TTSAA 4 cut(s) 10, 228, 456, 623
AluBI AGCT 6 cut(s) 44, 170, 311, 509, 528, 619
AluI AGCT 6 cut(s) 44, 170, 311, 509, 528, 619
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 43, 392
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 281, 473
AsiGI ACCGGT 2 cut(s) 272, 341
AspLEI GCGC 2 cut(s) 181, 215
AspS9I GGNCC 2 cut(s) 233, 344
AsuHPI GGTGA 2 cut(s) 287, 506
AvaII GGWCC 2 cut(s) 233, 344
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 462
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 293, 485
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 482
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 282, 474
BlsI GCNGC 2 cut(s) 283, 475
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 233, 344
BmgT120I GGNCC 2 cut(s) 233, 344
BmiI GGNNCC 1 cut(s) 464
BmsI GCATC 1 cut(s) 403
BoxI GACNNNNGTC 1 cut(s) 360
BpiI GAAGAC 2 cut(s) 93, 360
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BsaBI GATNNNNATC 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 272, 341
Bse118I RCCGGY 2 cut(s) 272, 341
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 4 cut(s) 158, 222, 249, 619
Bse8I GATNNNNATC 1 cut(s) 383
BseJI GATNNNNATC 1 cut(s) 383
BseMI GCAATG 4 cut(s) 158, 222, 249, 619
BseMII CTCAG 4 cut(s) 162, 234, 339, 389
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 293, 485
BshNI GGYRCC 1 cut(s) 462
BshTI ACCGGT 2 cut(s) 272, 341
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 273, 342
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 48, 200, 384
BspACI CCGC 1 cut(s) 143
BspCNI CTCAG 4 cut(s) 163, 235, 340, 388
BspLI GGNNCC 1 cut(s) 464
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 43, 392
BspT107I GGYRCC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 4 cut(s) 158, 222, 249, 619
BsrFI RCCGGY 2 cut(s) 272, 341
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 3 cut(s) 48, 200, 384
Bst4CI ACNGT 3 cut(s) 82, 95, 359
Bst6I CTCTTC 1 cut(s) 555
BstDEI CTNAG 4 cut(s) 171, 243, 348, 375
BstHHI GCGC 2 cut(s) 181, 215
BstKTI GATC 3 cut(s) 51, 203, 387
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 48, 200, 384
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstPAI GACNNNNGTC 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 293, 485
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 100, 146
BveI ACCTGC 1 cut(s) 482
CfoI GCGC 2 cut(s) 181, 215
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 2 cut(s) 233, 344
CseI GACGC 1 cut(s) 379
Csp6I GTAC 4 cut(s) 78, 292, 339, 550
CspAI ACCGGT 2 cut(s) 272, 341
CviAII CATG 1 cut(s) 134
CviJI RGCY 9 cut(s) 29, 44, 99, 170, 311, 509, 528, 607, 619
CviKI_1 RGCY 9 cut(s) 29, 44, 99, 170, 311, 509, 528, 607, 619
CviQI GTAC 4 cut(s) 78, 292, 339, 550
DdeI CTNAG 4 cut(s) 171, 243, 348, 375
DpnI GATC 3 cut(s) 50, 202, 386
DpnII GATC 3 cut(s) 48, 200, 384
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 233, 344
Eco57I CTGAAG 1 cut(s) 531
Eco81I CCTNAGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 233
FaeI CATG 1 cut(s) 137
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 133
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 282, 474
Fsp4HI GCNGC 2 cut(s) 282, 474
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 2 cut(s) 180, 214
GlaI GCGC 2 cut(s) 180, 214
GluI GCNGC 2 cut(s) 282, 474
HapII CCGG 2 cut(s) 273, 342
HgaI GACGC 1 cut(s) 379
HhaI GCGC 2 cut(s) 181, 215
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 2 cut(s) 179, 213
HinP1I GCGC 2 cut(s) 179, 213
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 3 cut(s) 121, 569, 626
HpaII CCGG 2 cut(s) 273, 342
HphI GGTGA 2 cut(s) 287, 506
Hpy166II GTNNAC 2 cut(s) 300, 580
Hpy188I TCNGA 3 cut(s) 244, 378, 574
Hpy188III TCNNGA 2 cut(s) 347, 630
Hpy8I GTNNAC 2 cut(s) 300, 580
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 3 cut(s) 82, 95, 359
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 5 cut(s) 151, 300, 416, 473, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 4 cut(s) 171, 243, 348, 375
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 2 cut(s) 179, 213
Kzo9I GATC 3 cut(s) 48, 200, 384
LmnI GCTCC 3 cut(s) 41, 220, 443
LpnPI CCDG 5 cut(s) 280, 286, 355, 360, 477
Lsp1109I GCAGC 2 cut(s) 293, 485
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 494
MalI GATC 3 cut(s) 50, 202, 386
MboI GATC 3 cut(s) 48, 200, 384
MboII GAAGA 5 cut(s) 98, 365, 524, 527, 572
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 2 cut(s) 54, 184
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 6 cut(s) 78, 113, 343, 550, 556, 593
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 2 cut(s) 273, 342
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 3 cut(s) 48, 200, 384
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 464
NmuCI GTSAC 1 cut(s) 494
NsbI TGCGCA 2 cut(s) 180, 214
PaqCI CACCTGC 1 cut(s) 482
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 121, 626
PinAI ACCGGT 2 cut(s) 272, 341
PkrI GCNGC 2 cut(s) 283, 475
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PpuMI RGGWCCY 1 cut(s) 233
PshAI GACNNNNGTC 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 2 cut(s) 233, 344
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 4 cut(s) 79, 293, 340, 551
RsaNI GTAC 4 cut(s) 78, 292, 339, 550
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 282, 474
Sau3AI GATC 3 cut(s) 48, 200, 384
Sau96I GGNCC 2 cut(s) 233, 344
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 578
SduI GDGCHC 1 cut(s) 302
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 2 cut(s) 233, 344
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 2 cut(s) 54, 184
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 82, 95, 359
TaiI ACGT 1 cut(s) 488
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 54, 184
TatI WGTACW 2 cut(s) 77, 291
TfiI GAWTC 2 cut(s) 121, 626
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 100, 153
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 2 cut(s) 281, 473
Tsp45I GTSAC 1 cut(s) 494
TspRI CASTG 2 cut(s) 100, 153
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 233, 344
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.