MD08G1133700.v1.1

peptidase inhibitor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000259
Physical Location & Seq
Forward (+)
12694531 .. 12694860
330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1133700.v1.1.491

Sequence Viewer

Length: 330 bp
ATGCACTATGCCAATGTAAGATCTAGGGACTACGCAATAGAGCACTCGATGAAGCCTTATGGTGAGAGCATAACCTCAGGTGAAGGCATGACGGGTGCAGCTGCTGTCAAGTATTGGGTTACCGAGAATGAGTTCTATGACTACAACCAAAACAAATGTGTTATCGATGAATGTGGTCACTACCTTGCTGTGAATTGGAGCAAATCAACCTATGTTGGTTGTGCCACATCGTTGTGCACGAATGGACAAACCTTTGTCGTTTGCGATCAGTGGCGAAGCCAGGATTTCTCGGGGGGAAAGGCGAACTTAAAAGAATGCAAGGTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

110

Amino Acids

12.27

Weight (kDa)

6.26

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 17 - 89 2.5e-10 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 2 cut(s) 45, 239
Alw44I GTGCAC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 98, 101
Asp700I GAANNNNTTC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 74, 92
AvaI CYCGRG 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 45, 239
BbvI GCAGC 2 cut(s) 88, 110
BciT130I CCWGG 1 cut(s) 281
BfaI CTAG 1 cut(s) 24
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 99, 102
BlsI GCNGC 2 cut(s) 100, 103
Bme1390I CCNGG 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 165
Bse21I CCTNAGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 165
BseMII CTCAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 2 cut(s) 88, 110
BsgI GTGCAG 1 cut(s) 117
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 45, 239
BsiHKCI CYCGRG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 2 cut(s) 45, 239
Bsp143I GATC 2 cut(s) 20, 265
BspCNI CTCAG 1 cut(s) 89
BspDI ATCGAT 1 cut(s) 165
BssMI GATC 2 cut(s) 20, 265
Bst2UI CCWGG 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 76
BstEII GGTNACC 1 cut(s) 118
BstKTI GATC 2 cut(s) 23, 268
BstMBI GATC 2 cut(s) 20, 265
BstNI CCWGG 1 cut(s) 281
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 88, 110
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 275
CaiI CAGNNNCTG 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 165
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 55, 101, 279
CviKI_1 RGCY 3 cut(s) 55, 101, 279
DdeI CTNAG 1 cut(s) 76
DpnI GATC 2 cut(s) 22, 267
DpnII GATC 2 cut(s) 20, 265
Eco81I CCTNAGG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 91
FaiI YATR 6 cut(s) 9, 60, 71, 89, 138, 213
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 99, 102
Fsp4HI GCNGC 2 cut(s) 99, 102
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 99, 102
Hin1II CATG 1 cut(s) 91
HphI GGTGA 2 cut(s) 74, 92
Hpy166II GTNNAC 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 4, 98, 237, 318
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 2 cut(s) 20, 265
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 3 cut(s) 63, 266, 293
Lsp1109I GCAGC 2 cut(s) 88, 110
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 118, 176
MalI GATC 2 cut(s) 22, 267
MboI GATC 2 cut(s) 20, 265
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 45, 239
MluCI AATT 1 cut(s) 193
MnlI CCTC 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 2 cut(s) 308, 324
MslI CAYNNNNRTG 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 1 cut(s) 281
NdeII GATC 2 cut(s) 20, 265
NlaIII CATG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PctI GAATGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 100, 103
Psp6I CCWGG 1 cut(s) 279
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 232
SaqAI TTAA 2 cut(s) 308, 324
SatI GCNGC 2 cut(s) 99, 102
Sau3AI GATC 2 cut(s) 20, 265
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 2 cut(s) 45, 239
SetI ASST 7 cut(s) 77, 82, 103, 186, 212, 254, 324
SmiMI CAYNNNNRTG 1 cut(s) 232
Sse9I AATT 1 cut(s) 193
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 279
TaqI TCGA 2 cut(s) 47, 165
TasI AATT 1 cut(s) 193
Tru1I TTAA 2 cut(s) 308, 324
Tru9I TTAA 2 cut(s) 308, 324
TscAI CASTG 1 cut(s) 275
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 98, 101
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 65, 183
TspRI CASTG 1 cut(s) 275
VneI GTGCAC 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.