Rmu_sc0000391.1_g000011

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000391.1
OG0000259
Physical Location & Seq
Forward (+)
39897 .. 40971
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000391.1_g000011.1.cds

Sequence Viewer

Length: 297 bp
atgctgatcgagaacattgcgagtggtttgggtatgaccggagaagcagcgacaaattactggtgcactgagaaagccgaatacaactacaacacaaataaatgtaccggccctgaggaagatggttgtcgccactacactcagagtcagttgttggtaaaagaaggaagagctaggttgagtgagatgtcagcctctccaaagaaacttcgattgaggcttgcaatgggcatgaagaatcctgacattgaaaacataattaaggctaatcactgtggctccagcgaggactgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

98

Amino Acids

10.89

Weight (kDa)

6.1

Isoelectric Point (pI)

67.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 106
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 68
Alw44I GTGCAC 1 cut(s) 64
AoxI GGCC 1 cut(s) 109
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 116
BcgI CGANNNNNNTGC 1 cut(s) 33
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 65
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 2 cut(s) 15, 231
BseMI GCAATG 2 cut(s) 15, 231
BseMII CTCAG 3 cut(s) 60, 105, 155
BseNI ACTGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 2 cut(s) 39, 108
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 3 cut(s) 61, 106, 154
BspLI GGNNCC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 15, 231
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 275, 293
Bst6I CTCTTC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 3 cut(s) 69, 114, 141
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 66, 271
Cac8I GCNNGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 232
CviJI RGCY 7 cut(s) 77, 111, 173, 194, 220, 266, 279
CviKI_1 RGCY 7 cut(s) 77, 111, 173, 194, 220, 266, 279
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 3 cut(s) 69, 114, 141
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 114
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 35, 233, 257
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 1 cut(s) 111
HapII CCGG 2 cut(s) 39, 108
Hin1II CATG 1 cut(s) 235
HinfI GANTC 2 cut(s) 145, 238
HpaII CCGG 2 cut(s) 39, 108
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 10, 242
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 275, 293
HpyCH4V TGCA 2 cut(s) 66, 224
HpyF3I CTNAG 3 cut(s) 69, 114, 141
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 1 cut(s) 6
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 5 cut(s) 46, 52, 121, 126, 255
Lsp1109I GCAGC 1 cut(s) 59
MaeI CTAG 1 cut(s) 174
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 131, 180, 247
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 55, 258
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 4 cut(s) 109, 205, 210, 280
MseI TTAA 2 cut(s) 261, 295
MspI CCGG 2 cut(s) 39, 108
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 110
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 261, 295
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 68
SetI ASST 2 cut(s) 175, 179
Sse9I AATT 2 cut(s) 55, 258
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 275, 293
TaqI TCGA 2 cut(s) 9, 211
TasI AATT 2 cut(s) 55, 258
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 261, 295
Tru9I TTAA 2 cut(s) 261, 295
TscAI CASTG 2 cut(s) 73, 278
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 2 cut(s) 73, 278
VneI GTGCAC 1 cut(s) 64
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.