FvH4_2g02820

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000259
Physical Location & Seq
Forward (+)
2236775 .. 2237835
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02820.t1

Sequence Viewer

Length: 498 bp
ATGGAGTTCATCAGTAACCAAAACCTGTTAGCCATATGCTCTGTAGCATTGGTCGTAATCACTTGTGTCCCTTTGGCAAGCACCGTCGAGGACGACAGTGGGTTCCTTAAAGCACACAACGAAATTCGCCAAGCGCATGGCCTCCCACCACTGCAATGGAATGAAACCATAGCAGATTATGCACAAAACTATGCCAACCAGAGAGCCGAGGACTGTGCCATGGAGCATTCGGATGGTCCTTATGCCGAGAACATCGCGAGTGGTCTTGGTATGACCGGTGAAGCAGCAACCAAGTATTGGTGTACCGAGGAGTCGGAATACGACTACAAGAACAACAAATGTACTGGTCCTGAAGAAGATGGTTGCCGCCACTATACTCAGGTGGTTACAAGGGACACAACCCAGCTTGGTTGCGCGAGGGCCCAGTGCAAAAATGGCGACATGTTCGTAACCTGCAACTATGATCCGTCTGGAGATTGGGATAAACAACCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

166

Amino Acids

18.35

Weight (kDa)

4.44

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 36 - 154 2.8e-24 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 297
AccII CGCG 2 cut(s) 257, 416
AciI CCGC 1 cut(s) 367
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 2 cut(s) 304, 343
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 275
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
AlwI GGATC 1 cut(s) 458
AoxI GGCC 2 cut(s) 139, 420
ApaI GGGCCC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 123
AsiGI ACCGGT 1 cut(s) 275
AspLEI GCGC 2 cut(s) 136, 416
AspS9I GGNCC 4 cut(s) 236, 347, 420, 421
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 236, 347
BaeGI GKGCMC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 227, 353
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BfmI CTRYAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 461
BisI GCNGC 2 cut(s) 285, 367
BlsI GCNGC 2 cut(s) 286, 368
Bme18I GGWCC 2 cut(s) 236, 347
BmgT120I GGNCC 4 cut(s) 236, 347, 420, 421
BmiI GGNNCC 2 cut(s) 104, 422
BmrI ACTGGG 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 207, 219, 306
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 349, 424
Bse3DI GCAATG 1 cut(s) 161
BseDI CCNNGG 3 cut(s) 207, 219, 306
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 2 cut(s) 349, 424
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 402
Bsh1236I CGCG 2 cut(s) 257, 416
BshFI GGCC 2 cut(s) 141, 422
BshTI ACCGGT 1 cut(s) 275
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 2 cut(s) 53, 407
BslI CCNNNNNNNGG 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 53, 407
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 141, 422
Bsp120I GGGCCC 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 463
Bsp19I CCATGG 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 257
BspACI CCGC 1 cut(s) 367
BspANI GGCC 2 cut(s) 141, 422
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 2 cut(s) 257, 416
BspLI GGNNCC 2 cut(s) 104, 422
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 2 cut(s) 349, 424
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 207, 219, 306
BssMI GATC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 3 cut(s) 85, 98, 215
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 2 cut(s) 257, 416
BstHHI GCGC 2 cut(s) 136, 416
BstKTI GATC 1 cut(s) 466
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 2 cut(s) 179, 435
BstNSI RCATGY 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 2 cut(s) 257, 416
BstV1I GCAGC 1 cut(s) 296
BstXI CCANNNNNNTGG 2 cut(s) 137, 156
BsuRI GGCC 2 cut(s) 141, 422
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 3 cut(s) 103, 149, 431
BtuMI TCGCGA 1 cut(s) 257
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 2 cut(s) 136, 416
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 4 cut(s) 236, 347, 420, 421
Csp6I GTAC 2 cut(s) 303, 342
CspAI ACCGGT 1 cut(s) 275
CviAII CATG 3 cut(s) 137, 220, 442
CviJI RGCY 5 cut(s) 32, 141, 206, 406, 422
CviKI_1 RGCY 5 cut(s) 32, 141, 206, 406, 422
CviQI GTAC 2 cut(s) 303, 342
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 2 cut(s) 236, 347
Eco57I CTGAAG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 140, 223, 445
FaqI GGGAC 2 cut(s) 53, 407
FatI CATG 3 cut(s) 136, 219, 441
FauNDI CATATG 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 285, 367
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 285, 367
GlaI GCGC 2 cut(s) 135, 415
GluI GCNGC 2 cut(s) 285, 367
GsaI CCCAGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 2 cut(s) 141, 422
HapII CCGG 1 cut(s) 276
HhaI GCGC 2 cut(s) 136, 416
Hin1II CATG 3 cut(s) 140, 223, 445
Hin6I GCGC 2 cut(s) 134, 414
HinP1I GCGC 2 cut(s) 134, 414
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 276
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 232, 316
Hpy188III TCNNGA 3 cut(s) 256, 350, 471
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 1 cut(s) 89
HpyCH4III ACNGT 3 cut(s) 85, 98, 215
HpyCH4V TGCA 4 cut(s) 154, 182, 429, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 435
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 3 cut(s) 140, 223, 445
HspAI GCGC 2 cut(s) 134, 414
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 296
MaeIII GTNAC 3 cut(s) 14, 385, 448
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 2 cut(s) 365, 368
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 82, 152, 202, 301, 411
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 154, 231
MspI CCGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 226
MvnI CGCG 2 cut(s) 257, 416
MwoI GCNNNNNNNGC 2 cut(s) 179, 435
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 35
NdeII GATC 1 cut(s) 463
NlaIII CATG 3 cut(s) 140, 223, 445
NlaIV GGNNCC 2 cut(s) 104, 422
NmeAIII GCCGAG 2 cut(s) 232, 271
NruI TCGCGA 1 cut(s) 257
NspI RCATGY 1 cut(s) 445
PciI ACATGT 1 cut(s) 441
PctI GAATGC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 2 cut(s) 286, 368
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PscI ACATGT 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 402
PspN4I GGNNCC 2 cut(s) 104, 422
PspOMI GGGCCC 1 cut(s) 420
PspPI GGNCC 4 cut(s) 236, 347, 420, 421
RruI TCGCGA 1 cut(s) 257
RsaI GTAC 2 cut(s) 304, 343
RsaNI GTAC 2 cut(s) 303, 342
RseI CAYNNNNRTG 2 cut(s) 154, 231
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 285, 367
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 4 cut(s) 236, 347, 420, 421
SchI GAGTC 1 cut(s) 320
SduI GDGCHC 1 cut(s) 424
SetI ASST 5 cut(s) 27, 384, 408, 455, 493
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 2 cut(s) 236, 347
SmiMI CAYNNNNRTG 2 cut(s) 154, 231
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 367
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 3 cut(s) 85, 98, 215
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 123
TatI WGTACW 1 cut(s) 341
TauI GCSGC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 3 cut(s) 103, 156, 431
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 3 cut(s) 103, 156, 431
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 236, 347
XapI RAATTY 1 cut(s) 123
XceI RCATGY 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 2 cut(s) 153, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.