pycom05g10600

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000259
Physical Location & Seq
Reverse (-)
14032523 .. 14033017
495 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g10600.1

Sequence Viewer

Length: 495 bp
ATGGAAAACAAAATGGGGTACAATATTAAGCTTGTGTTGTGCATCTGCTCCTTGGCATTAATCTTAGCTCGTGTCTCCTCAGCCACTTCCAGAAGAGATATCAGAGGCTTCATCAATGAACACAACAAAGCTCGGGCGGAGGTCGGTGTTGGTCCGATCAAATGGAACGAGACCATAGCAAGGTATGCACAAAACTATGCCAATGTAAGATCTTGGGACTGTGCAATGGAGCACTCAATGGGGCCTTATGGTGAGAACATAGCCTCAGGCGAAGGCATGACGGGTGCAGCTGCTGTCAAGTATTGGGTTACCGAGAAGGAGTTCTATGACTACAACCAAAACAAATGTATTAACGACGAATGTGGTCACTACCTTGCTGTGATTTGGAGCAAATCAACCTATGTTGGTTGTGCCACGTCATTGTGCACGAATGGACAAACCTTCGTGATTTGTGATTATGATCCTTCTGTAACAGATGGGGAGCGTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

165

Amino Acids

18.34

Weight (kDa)

5.91

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 39 - 153 5.4e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 455
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 180
AjiI CACGTC 1 cut(s) 417
AluBI AGCT 4 cut(s) 31, 68, 131, 290
AluI AGCT 4 cut(s) 31, 68, 131, 290
Alw21I GWGCWC 2 cut(s) 234, 428
Alw26I GTCTC 2 cut(s) 79, 164
Alw44I GTGCAC 1 cut(s) 424
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 287, 290
AseI ATTAAT 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 152, 242
AsuHPI GGTGA 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 428
BauI CACGAG 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 234, 428
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 277, 299
BccI CCATC 1 cut(s) 470
BcoDI GTCTC 2 cut(s) 79, 164
BglII AGATCT 1 cut(s) 209
BisI GCNGC 2 cut(s) 288, 291
BlsI GCNGC 2 cut(s) 289, 292
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 2 cut(s) 152, 242
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse21I CCTNAGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 93, 279
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 2 cut(s) 277, 299
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 2 cut(s) 234, 428
BsiHKCI CYCGRG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 79, 164
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 234, 428
Bsp143I GATC 3 cut(s) 156, 209, 460
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 92, 278
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 156, 209, 460
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 64, 79, 265
BstEII GGTNACC 1 cut(s) 307
BstKTI GATC 3 cut(s) 159, 212, 463
BstMAI GTCTC 2 cut(s) 79, 164
BstMBI GATC 3 cut(s) 156, 209, 460
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstPI GGTNACC 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 2 cut(s) 277, 299
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 265
BsuRI GGCC 1 cut(s) 244
BtrI CACGTC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 152, 242
CseI GACGC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 277
CviJI RGCY 8 cut(s) 31, 68, 83, 108, 131, 244, 263, 290
CviKI_1 RGCY 8 cut(s) 31, 68, 83, 108, 131, 244, 263, 290
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 64, 79, 265
DpnI GATC 3 cut(s) 158, 211, 462
DpnII GATC 3 cut(s) 156, 209, 460
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 307
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 280
FaiI YATR 9 cut(s) 176, 186, 198, 249, 260, 278, 327, 402, 459
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 288, 291
Fsp4HI GCNGC 2 cut(s) 288, 291
GluI GCNGC 2 cut(s) 288, 291
HaeIII GGCC 1 cut(s) 244
HgaI GACGC 1 cut(s) 473
Hin1II CATG 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 29
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 2 cut(s) 104, 156
Hpy188III TCNNGA 2 cut(s) 90, 445
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 4 cut(s) 266, 310, 451, 474
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 42, 188, 224, 287, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 3 cut(s) 64, 79, 265
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 3 cut(s) 156, 209, 460
LmnI GCTCC 4 cut(s) 53, 229, 387, 481
LpnPI CCDG 2 cut(s) 103, 252
Lsp1109I GCAGC 2 cut(s) 277, 299
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 3 cut(s) 307, 365, 469
MalI GATC 3 cut(s) 158, 211, 462
MboI GATC 3 cut(s) 156, 209, 460
MboII GAAGA 1 cut(s) 105
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 234, 428
MnlI CCTC 4 cut(s) 88, 98, 133, 274
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 3 cut(s) 27, 59, 351
MspA1I CMGCKG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 3 cut(s) 156, 209, 460
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 320
PkrI GCNGC 2 cut(s) 289, 292
PshBI ATTAAT 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 152, 242
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 27, 59, 351
SatI GCNGC 2 cut(s) 288, 291
Sau3AI GATC 3 cut(s) 156, 209, 460
Sau96I GGNCC 2 cut(s) 152, 242
SduI GDGCHC 2 cut(s) 234, 428
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 1 cut(s) 152
SsiI CCGC 1 cut(s) 137
SspI AATATT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 419
Tru1I TTAA 3 cut(s) 27, 59, 351
Tru9I TTAA 3 cut(s) 27, 59, 351
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 287, 290
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 100, 132
VneI GTGCAC 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.