Prupe.8G154900_v2.0.a1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000259
Physical Location & Seq
Reverse (-)
16653037 .. 16653531
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G154900.1

Sequence Viewer

Length: 495 bp
ATGGGAGCTATCAATAAGCTTTTATTAGGCATATTCTCCATAGCCCTAATCTTAAACACCCATGCCTCTCAAGCCAGACCCAACAAAGAACCCCACCAGGACTTCATAGATGAACACAACAGAGCTCGAGCTGAGGTTGGTGTTGGTCCAATCAAATGGAACGACACTGTTGCAGCCTACGCCCAGAAGTATGCGGATTCGAAGATTGAGACGTGTGAAATGGTGCACTCACAGGGCCCATATGGTGAGAACTTGGCTGAAGGCTATGGAGAAATGACCGGCGGGCAGGCTGTGAAGTTTTGGGTGACTGAGAAGCCCAACTACGACTATGCCTCCAACACATGCGTTGGTGATGTCTGTGGTCACTACACTCAGGTGGTTTGGCGCAATTCGACTCATGTGGGTTGTGCTAGGGCTATGTGCAAGAATGGCTGGATGTTTGTGATTTGTAGTTATTATCCTCCTGGAAATTATATAGGAGAGCGTCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

165

Amino Acids

18.27

Weight (kDa)

6.28

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 194, 282
AcuI CTGAAG 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 212
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 2 cut(s) 96, 463
AleI CACNNNNGTG 1 cut(s) 374
AluBI AGCT 4 cut(s) 8, 19, 125, 131
AluI AGCT 4 cut(s) 8, 19, 125, 131
Alw21I GWGCWC 2 cut(s) 127, 228
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 235
ApaI GGGCCC 1 cut(s) 239
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 146, 235, 236
AsuHPI GGTGA 3 cut(s) 257, 316, 362
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 2 cut(s) 228, 239
BanII GRGCYC 2 cut(s) 127, 239
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
Bbv12I GWGCWC 2 cut(s) 127, 228
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 2 cut(s) 98, 465
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 411, 493
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 98, 465
Bme18I GGWCC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 126
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 146, 235, 236
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 98, 465
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bse118I RCCGGY 1 cut(s) 278
BseBI CCWGG 2 cut(s) 98, 465
BseGI GGATG 1 cut(s) 441
BseMII CTCAG 3 cut(s) 123, 300, 386
BseSI GKGCMC 2 cut(s) 228, 239
BseXI GCAGC 1 cut(s) 185
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 127, 228
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 200
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 3 cut(s) 127, 228, 239
BspACI CCGC 2 cut(s) 194, 282
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 124, 301, 385
BspLI GGNNCC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
Bst2UI CCWGG 2 cut(s) 98, 465
Bst4CI ACNGT 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 284, 288
BstDEI CTNAG 3 cut(s) 132, 309, 372
BstF5I GGATG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 203
BstMWI GCNNNNNNNGC 3 cut(s) 71, 179, 429
BstNI CCWGG 2 cut(s) 98, 465
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 96, 463
BstSLI GKGCMC 2 cut(s) 228, 239
BstV1I GCAGC 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 237
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 284, 288
CfoI GCGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 146, 235, 236
CseI GACGC 1 cut(s) 473
CviAII CATG 3 cut(s) 62, 342, 398
DdeI CTNAG 3 cut(s) 132, 309, 372
Ecl136II GAGCTC 1 cut(s) 125
Eco24I GRGCYC 2 cut(s) 127, 239
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 96, 463
EcoT38I GRGCYC 2 cut(s) 127, 239
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 3 cut(s) 65, 345, 401
FatI CATG 3 cut(s) 61, 341, 397
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 2 cut(s) 127, 239
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 2 cut(s) 411, 493
GlaI GCGC 1 cut(s) 386
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 473
HhaI GCGC 1 cut(s) 387
Hin1II CATG 3 cut(s) 65, 345, 401
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 197, 394
HpaII CCGG 1 cut(s) 279
HphI GGTGA 3 cut(s) 257, 316, 362
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 3 cut(s) 173, 226, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 179, 429
HpyF3I CTNAG 3 cut(s) 132, 309, 372
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 3 cut(s) 65, 345, 401
HspAI GCGC 1 cut(s) 385
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 2 cut(s) 411, 493
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 304, 362
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 127, 228, 239
MluCI AATT 2 cut(s) 388, 469
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 4 cut(s) 76, 127, 343, 471
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 374
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 2 cut(s) 98, 465
MvaI CCWGG 2 cut(s) 98, 465
MwoI GCNNNNNNNGC 3 cut(s) 71, 179, 429
NdeI CATATG 1 cut(s) 241
NlaIII CATG 3 cut(s) 65, 345, 401
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 304, 362
NspI RCATGY 1 cut(s) 345
NspV TTCGAA 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 126
PfeI GAWTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 96, 463
PspGI CCWGG 2 cut(s) 96, 463
PspN4I GGNNCC 1 cut(s) 237
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 3 cut(s) 146, 235, 236
PspXI VCTCGAGB 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 174
Sau96I GGNCC 3 cut(s) 146, 235, 236
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 2 cut(s) 98, 465
SduI GDGCHC 3 cut(s) 127, 228, 239
SetI ASST 7 cut(s) 10, 21, 127, 133, 138, 215, 378
Sfr274I CTCGAG 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 200
SinI GGWCC 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 69, 126
SmoI CTYRAG 2 cut(s) 69, 126
Sse9I AATT 2 cut(s) 388, 469
SsiI CCGC 2 cut(s) 194, 282
SspMI CTAG 2 cut(s) 411, 493
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 96, 463
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 215
TaqI TCGA 3 cut(s) 127, 200, 392
TasI AATT 2 cut(s) 388, 469
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 304, 362
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 2 cut(s) 304, 362
TspDTI ATGAA 2 cut(s) 94, 126
TspRI CASTG 1 cut(s) 172
VneI GTGCAC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 146
XceI RCATGY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 126
XspI CTAG 2 cut(s) 411, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.