pycom05g10570

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000259
Physical Location & Seq
Reverse (-)
13973096 .. 13974039
944 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g10570.1

Sequence Viewer

Length: 387 bp
ATGCTAATCAAGCAGCTCGTAGCTAGGGAAACATGCCTTTATCTTTCTATAAATAAGGCAAATCTCAAGTCCCATTTGTTTAACATCCATGAACCTTCCCAAGTCTACCTACAATATTTGAGACATTTCATAAATATGGAAAACAAAATGGGGTACAACATTAAGCTTGTGTTGTGCATCTGCTCCTTGGCATTAATCTTGGCTCGTGTCTCCTCAGCCACTTCCAGAAGAGATATCAGAGGCTTCATCAATGAACACAACAAAGCTCGGGCGGAGGTCGGTGTTGGTCCGATCAAATGGAACGAGACCATAGCAAGGTATGCACAAAACCATGCCAATGTAAGATCTTGGGACTGCAATGGAGCACTCAATGGGGCCTTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

129

Amino Acids

14.65

Weight (kDa)

9.65

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AciI CCGC 1 cut(s) 272
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 16, 23, 166, 266
AluI AGCT 4 cut(s) 16, 23, 166, 266
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 3 cut(s) 115, 214, 299
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AseI ATTAAT 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 287, 375
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 25
BcoDI GTCTC 3 cut(s) 115, 214, 299
BfaI CTAG 1 cut(s) 24
BglII AGATCT 1 cut(s) 344
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 287, 375
BmiI GGNNCC 1 cut(s) 376
BmsI GCATC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 55, 365
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 3 cut(s) 115, 214, 299
BsmFI GGGAC 2 cut(s) 55, 365
BsnI GGCC 1 cut(s) 377
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 2 cut(s) 291, 344
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 291, 344
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 223
BstAPI GCANNNNNTGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 2 cut(s) 294, 347
BstMAI GTCTC 3 cut(s) 115, 214, 299
BstMBI GATC 2 cut(s) 291, 344
BstMWI GCNNNNNNNGC 2 cut(s) 10, 320
BstNSI RCATGY 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 287, 375
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 33, 89, 332
CviJI RGCY 8 cut(s) 16, 23, 166, 203, 218, 243, 266, 377
CviKI_1 RGCY 8 cut(s) 16, 23, 166, 203, 218, 243, 266, 377
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 293, 346
DpnII GATC 2 cut(s) 291, 344
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 375
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 36, 92, 335
FaiI YATR 9 cut(s) 34, 50, 90, 131, 137, 311, 321, 333, 382
FaqI GGGAC 2 cut(s) 55, 365
FatI CATG 3 cut(s) 32, 88, 331
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 377
Hin1II CATG 3 cut(s) 36, 92, 335
HindIII AAGCTT 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 239, 291
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 177, 323, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 320
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 3 cut(s) 36, 92, 335
Kzo9I GATC 2 cut(s) 291, 344
LmnI GCTCC 2 cut(s) 188, 362
LpnPI CCDG 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 24
MalI GATC 2 cut(s) 293, 346
MboI GATC 2 cut(s) 291, 344
MboII GAAGA 1 cut(s) 240
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 367
MnlI CCTC 3 cut(s) 223, 233, 268
MseI TTAA 3 cut(s) 81, 162, 194
MslI CAYNNNNRTG 2 cut(s) 134, 336
MwoI GCNNNNNNNGC 2 cut(s) 10, 320
NdeII GATC 2 cut(s) 291, 344
NlaIII CATG 3 cut(s) 36, 92, 335
NlaIV GGNNCC 1 cut(s) 376
NspI RCATGY 1 cut(s) 36
PkrI GCNGC 1 cut(s) 15
PshBI ATTAAT 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 2 cut(s) 287, 375
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 2 cut(s) 134, 336
SaqAI TTAA 3 cut(s) 81, 162, 194
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 2 cut(s) 291, 344
Sau96I GGNCC 2 cut(s) 287, 375
SduI GDGCHC 1 cut(s) 367
SetI ASST 8 cut(s) 18, 25, 97, 111, 168, 268, 279, 320
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 134, 336
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SsiI CCGC 1 cut(s) 272
SspI AATATT 1 cut(s) 116
SspMI CTAG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 186
Tru1I TTAA 3 cut(s) 81, 162, 194
Tru9I TTAA 3 cut(s) 81, 162, 194
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 105, 118, 235, 267
VpaK11BI GGWCC 1 cut(s) 287
VspI ATTAAT 1 cut(s) 194
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.