Rorug05G0526300

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000259
Physical Location & Seq
Reverse (-)
71498741 .. 71499130
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0526300.1

Sequence Viewer

Length: 390 bp
ATGACTGCATTGTTCCAGTCAGCTTTCCGTTCACTGAGGAAGCCAAAAGGAATGGACAGACTAGCAGCGATCAAGAGTTTCTCCGAGAAAGGTGACCACAGAGTGCTTCCTCCCTCACCAGTTACACCAGCCTATGTGAAGGCAATGGCTGAAAAAACAGTAAATTCGGATCACGAAGAAGTGCAAGATGCATGCAGGAGTTTTGAGAACTATTTGGTGGAGATGATTGTTGAAGAAGGGAAAGTGAGGGACTTGACAGATGTGGAAGAGCTTCTGTATTGCTGGAAGAACCTGAAATGCCCTGTTTTTATTGATTTGGTTAGTAGATTCTACGGAGAGCTTTGCAAGGACCTGTTTTCACCTGACACTGATGGAAGTAGTAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

129

Amino Acids

14.6

Weight (kDa)

5.21

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 4 cut(s) 23, 271, 340, 384
AluI AGCT 4 cut(s) 23, 271, 340, 384
AlwI GGATC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 3 cut(s) 104, 108, 351
AvaII GGWCC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 365
BfaI CTAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmsI GCATC 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 16, 119
Bse3DI GCAATG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 16, 119
BseXI GCAGC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 69, 169
BspCNI CTCAG 1 cut(s) 27
BspPI GGATC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 2 cut(s) 16, 119
BssMI GATC 2 cut(s) 69, 169
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 35
BstEII GGTNACC 1 cut(s) 92
BstKTI GATC 2 cut(s) 72, 172
BstMBI GATC 2 cut(s) 69, 169
BstNSI RCATGY 1 cut(s) 195
BstPI GGTNACC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 32, 366
Cac8I GCNNGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 349
CviAII CATG 1 cut(s) 192
CviJI RGCY 7 cut(s) 23, 43, 131, 149, 271, 340, 384
CviKI_1 RGCY 7 cut(s) 23, 43, 131, 149, 271, 340, 384
DdeI CTNAG 1 cut(s) 35
DpnI GATC 2 cut(s) 71, 171
DpnII GATC 2 cut(s) 69, 169
DraIII CACNNNGTG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 349
Eco91I GGTNACC 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 349
EcoO65I GGTNACC 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 193
FaeI CATG 1 cut(s) 195
FaiI YATR 3 cut(s) 135, 193, 388
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 195
HinfI GANTC 1 cut(s) 327
HphI GGTGA 3 cut(s) 104, 108, 351
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 85, 169
Hpy188III TCNNGA 2 cut(s) 73, 173
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 133, 230
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 8, 184, 191, 195, 345
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 2 cut(s) 69, 169
LguI GCTCTTC 1 cut(s) 261
LpnPI CCDG 9 cut(s) 29, 132, 141, 181, 268, 305, 315, 365, 375
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 92, 121
MalI GATC 2 cut(s) 71, 171
MboI GATC 2 cut(s) 69, 169
MboII GAAGA 4 cut(s) 188, 245, 278, 298
MluCI AATT 1 cut(s) 163
MnlI CCTC 4 cut(s) 30, 120, 124, 240
Mph1103I ATGCAT 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 270
NdeII GATC 2 cut(s) 69, 169
NlaIII CATG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 195
PaeI GCATGC 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
PspEI GGTNACC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
SapI GCTCTTC 1 cut(s) 261
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 69, 169
Sau96I GGNCC 1 cut(s) 349
SetI ASST 8 cut(s) 25, 94, 273, 294, 342, 354, 364, 386
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 349
SphI GCATGC 1 cut(s) 195
Sse9I AATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 160
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 327
TscAI CASTG 2 cut(s) 39, 373
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 92
TspGWI ACGGA 2 cut(s) 17, 348
TspRI CASTG 2 cut(s) 39, 373
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.