MD10G1113400.v1.1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000259
Physical Location & Seq
Reverse (-)
18667019 .. 18667662
644 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1113400.v1.1.491

Sequence Viewer

Length: 483 bp
ATGGCGTTCAACGTCAAGCTTATTTTGGGCATCTTCACCATTGCAATCATCATGACCCATGTCGCCGCAATCCTACCCAAAGAAGAGATTGATGGCTTCATCAGGGAACACAACATAGCTCGTGCCGAGGTTGGCAATGGACCACTCAAATGGAACGAGACCATAGCCGAGTACGCTCAAGCTTATGCCGACAAAAGAATCGAGGACTGCCAAATGGAGCACTCAATGGGGCCTTACGGCGAGAACTTGGCCTCTGGTGATGGCATGACCGGTGCAGCCGCTACCAAATACTGGGTCACCGAGAAGGAATTCTATGACTACCAGCAAAACAAATGTGTCCGAGATGAATGTGGCCACTACCTTGGTGTGATATGGGGCAAAACTACTTATGTTGGATGTGGCATTTCAAAGTGCAAGAATGGACAAAACTATGTCATTTGCAACTACGATCCTTCTTACCAGGACGACGAGCGCCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

161

Amino Acids

18.07

Weight (kDa)

5.05

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 149 7.8e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AciI CCGC 2 cut(s) 66, 279
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 2 cut(s) 10, 408
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 3 cut(s) 19, 119, 182
AluI AGCT 3 cut(s) 19, 119, 182
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 443
AoxI GGCC 3 cut(s) 230, 249, 352
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AsiGI ACCGGT 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 140, 230
AsuHPI GGTGA 3 cut(s) 28, 269, 289
AvaII GGWCC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 354
BauI CACGAG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 86, 254
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 481
BfoI RGCGCY 1 cut(s) 475
BisI GCNGC 3 cut(s) 66, 276, 279
BlsI GCNGC 3 cut(s) 67, 277, 280
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 140, 230
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 301
BoxI GACNNNNGTC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 126, 361
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 39, 142
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 126, 361
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 2 cut(s) 39, 142
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 3 cut(s) 232, 251, 354
BshTI ACCGGT 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 3 cut(s) 232, 251, 354
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 2 cut(s) 66, 279
BspANI GGCC 3 cut(s) 232, 251, 354
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 39, 142
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 126, 361
BssMI GATC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 78
BstEII GGTNACC 1 cut(s) 295
BstF5I GGATG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 461
BstPAI GACNNNNGTC 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 287
BstXI CCANNNNNNTGG 2 cut(s) 150, 362
BsuRI GGCC 3 cut(s) 232, 251, 354
BtsCI GGATG 1 cut(s) 401
CciI TCATGA 1 cut(s) 51
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 140, 230
Csp6I GTAC 1 cut(s) 172
CspAI ACCGGT 1 cut(s) 269
CviAII CATG 3 cut(s) 52, 59, 265
CviJI RGCY 9 cut(s) 19, 96, 119, 167, 182, 232, 251, 278, 354
CviKI_1 RGCY 9 cut(s) 19, 96, 119, 167, 182, 232, 251, 278, 354
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 3 cut(s) 55, 62, 268
FatI CATG 3 cut(s) 51, 58, 264
Fnu4HI GCNGC 3 cut(s) 66, 276, 279
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 3 cut(s) 66, 276, 279
FspBI CTAG 1 cut(s) 481
GlaI GCGC 1 cut(s) 473
GluI GCNGC 3 cut(s) 66, 276, 279
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 3 cut(s) 232, 251, 354
HapII CCGG 1 cut(s) 270
HhaI GCGC 1 cut(s) 474
Hin1II CATG 3 cut(s) 55, 62, 268
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HindIII AAGCTT 2 cut(s) 17, 180
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 270
HphI GGTGA 3 cut(s) 28, 269, 289
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 2 cut(s) 298, 462
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 4 cut(s) 44, 275, 414, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 3 cut(s) 55, 62, 268
HspAI GCGC 1 cut(s) 472
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 88, 240, 277, 283, 335, 446, 473
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 481
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 2 cut(s) 25, 95
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 1 cut(s) 308
MluNI TGGCCA 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 3 cut(s) 121, 196, 262
Mox20I TGGCCA 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 148
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 55, 62, 268
NlaIV GGNNCC 1 cut(s) 231
NmeAIII GCCGAG 2 cut(s) 151, 193
NmuCI GTSAC 1 cut(s) 295
PagI TCATGA 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 3 cut(s) 67, 277, 280
PshAI GACNNNNGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 459
PspEI GGTNACC 1 cut(s) 295
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 140, 230
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 148
SatI GCNGC 3 cut(s) 66, 276, 279
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 140, 230
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 15, 21, 121, 132, 184, 363
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 1 cut(s) 308
SsiI CCGC 2 cut(s) 66, 279
SspMI CTAG 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 361
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 308
TauI GCSGC 2 cut(s) 68, 281
TfiI GAWTC 1 cut(s) 198
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 88, 360
Van91I CCANNNNNTGG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.