Rmu_sc0000391.1_g000005

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000391.1
OG0000259
Physical Location & Seq
Forward (+)
28626 .. 29932
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000391.1_g000005.1.cds

Sequence Viewer

Length: 714 bp
atggggttcaacagacaaaacttaatagccgtatgctccacagctttgatcctaattacttatgtccctctagcaagtacagtcgaagacgacagtggcttcctcaaagcacacaatgagattcgcaaagatcacggtctcctgccactgcaatggaataaaaccatagctgagtatgcgcaaaattatgcaaataaaagatctgtggactgcgcaatggagcattcgaacggtccttatgctgagaacattgcgagtggtttgggtatgaccggtgaagcagcaacaaagttttggtgcactgagaaagatgaatacgactacaacacaaataaatgtaccggtcctgaggaagacggttgccgccactacactcaggtagttacgagggaaacaacccaacttggttgtgcaagggccaagtgcaaaaatggcgatatgtttgtaacctgcaactatgatccttctacagattgggaccagcgagccttcatgcagcaaaaaccacgttggcaggtgactatagaacaactgaaggagattgcaatagcttccgcagagtcagttgttggtaaaagaaggaagaggttgagtgagatgtcagcctctccaaagaaacttcgattgagccttgcaatggggatgaagaatcctgacattgaaaacataaggctgatcactgtggctccggcgaggactgttaagaatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

237

Amino Acids

26.64

Weight (kDa)

8.06

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
Acc16I TGCGCA 2 cut(s) 180, 214
Acc36I ACCTGC 2 cut(s) 458, 505
AciI CCGC 2 cut(s) 364, 555
AclWI GGATC 2 cut(s) 43, 455
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 2 cut(s) 79, 340
AfiI CCNNNNNNNGG 1 cut(s) 637
AgeI ACCGGT 2 cut(s) 272, 341
AgsI TTSAA 2 cut(s) 10, 662
AluBI AGCT 3 cut(s) 44, 170, 551
AluI AGCT 3 cut(s) 44, 170, 551
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 43, 455
AoxI GGCC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 281, 496
AsiGI ACCGGT 2 cut(s) 272, 341
AspLEI GCGC 2 cut(s) 181, 215
AspS9I GGNCC 4 cut(s) 233, 344, 417, 478
AsuHPI GGTGA 2 cut(s) 287, 529
AsuII TTCGAA 1 cut(s) 227
AvaII GGWCC 3 cut(s) 233, 344, 478
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 293, 508
BceAI ACGGC 1 cut(s) 14
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 468, 522
BfuAI ACCTGC 2 cut(s) 458, 505
BglII AGATCT 1 cut(s) 200
BisI GCNGC 3 cut(s) 282, 364, 497
BlsI GCNGC 3 cut(s) 283, 365, 498
Bme18I GGWCC 3 cut(s) 233, 344, 478
BmgT120I GGNCC 4 cut(s) 233, 344, 417, 478
BmiI GGNNCC 2 cut(s) 479, 687
BpiI GAAGAC 2 cut(s) 93, 360
Bpu14I TTCGAA 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 272, 341
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse118I RCCGGY 2 cut(s) 272, 341
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 4 cut(s) 158, 222, 249, 642
BseGI GGATG 1 cut(s) 648
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 4 cut(s) 158, 222, 249, 642
BseMII CTCAG 5 cut(s) 162, 234, 294, 339, 389
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 293, 508
BshFI GGCC 1 cut(s) 419
BshTI ACCGGT 2 cut(s) 272, 341
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 3 cut(s) 273, 342, 689
BslFI GGGAC 2 cut(s) 50, 491
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 50, 491
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 5 cut(s) 48, 130, 200, 460, 675
BspACI CCGC 2 cut(s) 364, 555
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 5 cut(s) 163, 235, 295, 340, 388
BspLI GGNNCC 2 cut(s) 479, 687
BspMI ACCTGC 2 cut(s) 458, 505
BspPI GGATC 2 cut(s) 43, 455
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 4 cut(s) 158, 222, 249, 642
BsrFI RCCGGY 2 cut(s) 272, 341
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 5 cut(s) 48, 130, 200, 460, 675
Bst4CI ACNGT 7 cut(s) 82, 95, 137, 233, 359, 682, 700
Bst6I CTCTTC 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 5 cut(s) 171, 243, 303, 348, 375
BstF5I GGATG 1 cut(s) 648
BstHHI GCGC 2 cut(s) 181, 215
BstKTI GATC 5 cut(s) 51, 133, 203, 463, 678
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 5 cut(s) 48, 130, 200, 460, 675
BstMWI GCNNNNNNNGC 2 cut(s) 176, 432
BstSFI CTRYAG 2 cut(s) 468, 522
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 293, 508
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 648
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 4 cut(s) 100, 146, 300, 678
BveI ACCTGC 2 cut(s) 458, 505
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 2 cut(s) 181, 215
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 4 cut(s) 233, 344, 417, 478
Csp6I GTAC 2 cut(s) 78, 339
CspAI ACCGGT 2 cut(s) 272, 341
CviAII CATG 1 cut(s) 493
CviQI GTAC 2 cut(s) 78, 339
DdeI CTNAG 5 cut(s) 171, 243, 303, 348, 375
DpnI GATC 5 cut(s) 50, 132, 202, 462, 677
DpnII GATC 5 cut(s) 48, 130, 200, 460, 675
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 3 cut(s) 233, 344, 478
Eco57I CTGAAG 1 cut(s) 554
Eco81I CCTNAGG 1 cut(s) 348
FaeI CATG 1 cut(s) 496
FaqI GGGAC 2 cut(s) 50, 491
FatI CATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 3 cut(s) 282, 364, 497
FokI GGATG 1 cut(s) 655
Fsp4HI GCNGC 3 cut(s) 282, 364, 497
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 2 cut(s) 180, 214
GlaI GCGC 2 cut(s) 180, 214
GluI GCNGC 3 cut(s) 282, 364, 497
HaeIII GGCC 1 cut(s) 419
HapII CCGG 3 cut(s) 273, 342, 689
HhaI GCGC 2 cut(s) 181, 215
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 2 cut(s) 179, 213
HinP1I GCGC 2 cut(s) 179, 213
HinfI GANTC 3 cut(s) 121, 560, 649
HpaII CCGG 3 cut(s) 273, 342, 689
HphI GGTGA 2 cut(s) 287, 529
Hpy166II GTNNAC 2 cut(s) 208, 300
Hpy188III TCNNGA 2 cut(s) 347, 653
Hpy8I GTNNAC 2 cut(s) 208, 300
HpyAV CCTTC 4 cut(s) 474, 499, 529, 573
HpyCH4III ACNGT 7 cut(s) 82, 95, 137, 233, 359, 682, 700
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 9 cut(s) 151, 191, 300, 413, 426, 453, 496, 545, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 432
HpyF3I CTNAG 5 cut(s) 171, 243, 303, 348, 375
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 2 cut(s) 179, 213
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 5 cut(s) 48, 130, 200, 460, 675
LmnI GCTCC 3 cut(s) 41, 220, 691
Lsp1109I GCAGC 2 cut(s) 293, 508
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 3 cut(s) 382, 445, 517
MalI GATC 5 cut(s) 50, 132, 202, 462, 677
MboI GATC 5 cut(s) 48, 130, 200, 460, 675
MboII GAAGA 4 cut(s) 98, 365, 595, 658
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 2 cut(s) 54, 184
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 7 cut(s) 78, 113, 343, 381, 579, 616, 687
MseI TTAA 2 cut(s) 23, 702
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 3 cut(s) 273, 342, 689
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 176, 432
NdeII GATC 5 cut(s) 48, 130, 200, 460, 675
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 2 cut(s) 479, 687
NmuCI GTSAC 1 cut(s) 517
NsbI TGCGCA 2 cut(s) 180, 214
NspV TTCGAA 1 cut(s) 227
PaqCI CACCTGC 1 cut(s) 505
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 121, 649
PinAI ACCGGT 2 cut(s) 272, 341
PkrI GCNGC 3 cut(s) 283, 365, 498
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 479, 687
PspPI GGNCC 4 cut(s) 233, 344, 417, 478
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 79, 340
RsaNI GTAC 2 cut(s) 78, 339
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 23, 702
SatI GCNGC 3 cut(s) 282, 364, 497
Sau3AI GATC 5 cut(s) 48, 130, 200, 460, 675
Sau96I GGNCC 4 cut(s) 233, 344, 417, 478
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 1 cut(s) 302
SetI ASST 8 cut(s) 46, 172, 381, 452, 511, 519, 553, 590
SfcI CTRYAG 2 cut(s) 468, 522
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 3 cut(s) 233, 344, 478
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 2 cut(s) 54, 184
SsiI CCGC 2 cut(s) 364, 555
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 7 cut(s) 82, 95, 137, 233, 359, 682, 700
TaiI ACGT 1 cut(s) 511
TaqI TCGA 3 cut(s) 84, 227, 622
TasI AATT 2 cut(s) 54, 184
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 121, 649
Tru1I TTAA 2 cut(s) 23, 702
Tru9I TTAA 2 cut(s) 23, 702
TscAI CASTG 4 cut(s) 100, 153, 307, 685
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 2 cut(s) 281, 496
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 327, 481, 659
TspRI CASTG 4 cut(s) 100, 153, 307, 685
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 3 cut(s) 233, 344, 478
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.