Prupe.8G154100_v2.0.a1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000259
Physical Location & Seq
Reverse (-)
16610547 .. 16611029
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G154100.1

Sequence Viewer

Length: 441 bp
ATGGCGTTCAACACGAAGCTTCTTTTGGCCATCTGCTGCGTCGCATTGGTCTTCACTCTTGTCTCTGCAAACATTTCCCAAGCAGAGATCGATGGCTTCCTCGAGGAGCACAACAAGGCTCGTAAAGAGTATGCCCAAGAATATGCCAACAAAAGAGTTGACGACTGCGCTATGGAGCACTCAAGAGGGCGTTGGGGGGAGAACTTGACCTCAGACGACGGCATGACTGGCGCAGCTGGCACTAAATATTGGGTCACCGAGAAAGAGTTCTATGACCCCAAGTCCAACAAATGTGTCAAAGAGGAATGTGGTCACTACCTTGCTGTGATCTGGGGGAAAACTACTGAGGTCGGATGTGGCATTTCAAAGTGCAAGGATGGAAAGAACTACATCGTTTGCAGCTACGATCCCATGTACCAGCCCGAGGACGAGCGCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

147

Amino Acids

16.47

Weight (kDa)

5.25

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 101
AclWI GGATC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 2 cut(s) 10, 366
AhdI GACNNNNNGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 3 cut(s) 19, 236, 402
AluI AGCT 3 cut(s) 19, 236, 402
Alw21I GWGCWC 2 cut(s) 111, 180
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 2 cut(s) 101, 422
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 36, 233, 399
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 3 cut(s) 170, 233, 435
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 2 cut(s) 101, 422
BalI TGGCCA 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 111, 180
BbvI GCAGC 3 cut(s) 23, 245, 411
BccI CCATC 3 cut(s) 38, 86, 371
BceAI ACGGC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 67
BfoI RGCGCY 1 cut(s) 436
BisI GCNGC 3 cut(s) 37, 234, 400
BlsI GCNGC 3 cut(s) 38, 235, 401
BmeRI GACNNNNNGTC 1 cut(s) 280
BmeT110I CYCGRG 2 cut(s) 101, 422
BpiI GAAGAC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 232
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 2 cut(s) 359, 382
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 2 cut(s) 225, 336
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 23, 245, 411
BshFI GGCC 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 111, 180
BsiHKCI CYCGRG 2 cut(s) 101, 422
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 2 cut(s) 101, 422
Bsp1286I GDGCHC 2 cut(s) 111, 180
Bsp143I GATC 3 cut(s) 87, 327, 406
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 224, 337
BspDI ATCGAT 1 cut(s) 90
BspPI GGATC 1 cut(s) 401
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 3 cut(s) 87, 327, 406
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 211, 345
BstEII GGTNACC 1 cut(s) 253
BstF5I GGATG 2 cut(s) 359, 382
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 3 cut(s) 170, 233, 435
BstKTI GATC 3 cut(s) 90, 330, 409
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 3 cut(s) 87, 327, 406
BstMWI GCNNNNNNNGC 2 cut(s) 228, 237
BstPI GGTNACC 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 23, 245, 411
BstV2I GAAGAC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 1 cut(s) 29
BsuTUI ATCGAT 1 cut(s) 90
BtsCI GGATG 2 cut(s) 359, 382
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 3 cut(s) 170, 233, 435
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 415
CviAII CATG 2 cut(s) 223, 412
CviJI RGCY 7 cut(s) 19, 29, 96, 119, 236, 402, 421
CviKI_1 RGCY 7 cut(s) 19, 29, 96, 119, 236, 402, 421
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 211, 345
DpnI GATC 3 cut(s) 89, 329, 408
DpnII GATC 3 cut(s) 87, 327, 406
DriI GACNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 280
Eco88I CYCGRG 2 cut(s) 101, 422
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
FaeI CATG 2 cut(s) 226, 415
FaiI YATR 7 cut(s) 132, 144, 173, 224, 273, 413, 439
FatI CATG 2 cut(s) 222, 411
Fnu4HI GCNGC 3 cut(s) 37, 234, 400
FokI GGATG 2 cut(s) 366, 389
Fsp4HI GCNGC 3 cut(s) 37, 234, 400
GlaI GCGC 3 cut(s) 169, 232, 434
GluI GCNGC 3 cut(s) 37, 234, 400
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 1 cut(s) 29
HgaI GACGC 1 cut(s) 28
HhaI GCGC 3 cut(s) 170, 233, 435
Hin1II CATG 2 cut(s) 226, 415
Hin6I GCGC 3 cut(s) 168, 231, 433
HinP1I GCGC 3 cut(s) 168, 231, 433
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 17
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 214, 353
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 44, 221
HpyCH4V TGCA 3 cut(s) 68, 372, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 237
HpyF3I CTNAG 2 cut(s) 211, 345
Hsp92II CATG 2 cut(s) 226, 415
HspAI GCGC 3 cut(s) 168, 231, 433
Kzo9I GATC 3 cut(s) 87, 327, 406
LmnI GCTCC 2 cut(s) 106, 175
LpnPI CCDG 4 cut(s) 213, 222, 316, 431
Lsp1109I GCAGC 3 cut(s) 23, 245, 411
MaeIII GTNAC 2 cut(s) 253, 311
MalI GATC 3 cut(s) 89, 329, 408
MboI GATC 3 cut(s) 87, 327, 406
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 111, 180
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 309, 331
MnlI CCTC 7 cut(s) 97, 110, 179, 220, 295, 340, 418
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 266
MscI TGGCCA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 228, 237
NdeII GATC 3 cut(s) 87, 327, 406
NlaIII CATG 2 cut(s) 226, 415
NmuCI GTSAC 2 cut(s) 253, 311
PaeR7I CTCGAG 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 38, 235, 401
PspEI GGTNACC 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SatI GCNGC 3 cut(s) 37, 234, 400
Sau3AI GATC 3 cut(s) 87, 327, 406
SduI GDGCHC 2 cut(s) 111, 180
SetI ASST 6 cut(s) 21, 212, 238, 321, 351, 404
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 101, 181
SmoI CTYRAG 2 cut(s) 101, 181
SspI AATATT 1 cut(s) 248
TaqI TCGA 2 cut(s) 90, 102
TseFI GTSAC 2 cut(s) 253, 311
TseI GCWGC 3 cut(s) 36, 233, 399
Tsp45I GTSAC 2 cut(s) 253, 311
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.