MD10G1113900.v1.1

SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000259
Physical Location & Seq
Reverse (-)
18702080 .. 18702652
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1113900.v1.1.491

Sequence Viewer

Length: 573 bp
ATGTCCCACATGTTGTATTCACATACTCAATTAATCTCGAAAACATCTGAGCCTTACAAAGTGATAGAAACAATGGGGATTATCAAGCTTTTCCTACGCATAAGCTCCATAGTACTAATCTTAAGTACTACCTATGTCTCTCAAGCCAGACCAGCCAAAGAACCCCACCAAGACTTCATAGACGAGCACAACAAAGCTAGGGCAGAGGTTGGTGTTGGTCCGATCAAATGGAACGAAACCGTTGCGGCCTATGCCCAAAAGTACGCTGATTCGAAGATTGAGACGTGTGAAATGGTGCATTCGCAAGGGCCTTACGGTGAGAACTTGGCTGAAGGCTGGGGATCAGAAATGACAGGCGGACAAGCTGTGAAATTTTGGGTGACTGAGAAGCCCGACTATGATTACGACTCTAACTCATGCACTGCTGGGAAGGTGTGTGGGCATTATACCCAAGTGGTTTGGCGCAATTCAACTCGTGTTGGATGTGCTAGGGCTAAGTGTAAGAATGGTATGATTTTTGTTATTTGTAGCTATGATCCTCCTGGAAACTGGATTGGGGAGCGTCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

191

Amino Acids

21.33

Weight (kDa)

6.99

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 61 - 178 2.5e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 245, 357
AclWI GGATC 2 cut(s) 349, 530
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 3 cut(s) 114, 127, 263
AflII CTTAAG 1 cut(s) 121
AflIII ACRYGT 2 cut(s) 9, 284
AgsI TTSAA 1 cut(s) 471
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 5 cut(s) 88, 105, 197, 365, 531
AluI AGCT 5 cut(s) 88, 105, 197, 365, 531
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 142, 275
AlwI GGATC 2 cut(s) 349, 530
AoxI GGCC 2 cut(s) 246, 308
ApoI RAATTY 1 cut(s) 371
AseI ATTAAT 1 cut(s) 32
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 218, 308
AsuHPI GGTGA 2 cut(s) 329, 391
AsuII TTCGAA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 218
BauI CACGAG 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 142, 275
BfaI CTAG 3 cut(s) 198, 489, 571
BfrI CTTAAG 1 cut(s) 121
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmcAI AGTACT 2 cut(s) 114, 127
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 218, 308
BmrFI CCNGG 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 554
BseBI CCWGG 1 cut(s) 543
BseGI GGATG 1 cut(s) 488
BseMII CTCAG 2 cut(s) 39, 375
BseNI ACTGG 1 cut(s) 554
BseYI CCCAGC 2 cut(s) 336, 425
BshFI GGCC 2 cut(s) 248, 310
BsiHKAI GWGCWC 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 142, 275
BsmBI CGTCTC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 2 cut(s) 248, 310
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 3 cut(s) 222, 341, 535
BspACI CCGC 2 cut(s) 245, 357
BspANI GGCC 2 cut(s) 248, 310
BspCNI CTCAG 2 cut(s) 40, 376
BspPI GGATC 2 cut(s) 349, 530
BspT104I TTCGAA 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 554
BssMI GATC 3 cut(s) 222, 341, 535
BssSI CACGAG 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 241, 317
BstAFI CTTAAG 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 272
BstDEI CTNAG 3 cut(s) 48, 384, 495
BstF5I GGATG 1 cut(s) 488
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 3 cut(s) 225, 344, 538
BstMAI GTCTC 2 cut(s) 142, 275
BstMBI GATC 3 cut(s) 222, 341, 535
BstMWI GCNNNNNNNGC 2 cut(s) 152, 251
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 541
BsuRI GGCC 2 cut(s) 248, 310
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 488
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 420
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 218, 308
CseI GACGC 1 cut(s) 551
Csp6I GTAC 3 cut(s) 113, 126, 262
CviAII CATG 2 cut(s) 10, 417
CviQI GTAC 3 cut(s) 113, 126, 262
DdeI CTNAG 3 cut(s) 48, 384, 495
DpnI GATC 3 cut(s) 224, 343, 537
DpnII GATC 3 cut(s) 222, 341, 535
EciI GGCGGA 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 2 cut(s) 13, 420
FatI CATG 2 cut(s) 9, 416
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 495
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 3 cut(s) 198, 489, 571
GlaI GCGC 1 cut(s) 464
GluI GCNGC 1 cut(s) 246
GsaI CCCAGC 2 cut(s) 340, 429
HaeIII GGCC 2 cut(s) 248, 310
HgaI GACGC 1 cut(s) 551
HhaI GCGC 1 cut(s) 465
Hin1II CATG 2 cut(s) 13, 420
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 2 cut(s) 269, 407
HphI GGTGA 2 cut(s) 329, 391
Hpy188I TCNGA 3 cut(s) 49, 222, 346
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 326, 424
HpyCH4III ACNGT 2 cut(s) 241, 317
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 2 cut(s) 298, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 251
HpyF3I CTNAG 3 cut(s) 48, 384, 495
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 2 cut(s) 13, 420
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 3 cut(s) 222, 341, 535
LmnI GCTCC 2 cut(s) 110, 559
LpnPI CCDG 8 cut(s) 160, 165, 322, 339, 411, 528, 535, 555
MaeI CTAG 3 cut(s) 198, 489, 571
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 224, 343, 537
MboI GATC 3 cut(s) 222, 341, 535
MboII GAAGA 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 29, 371, 466
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 2 cut(s) 199, 549
MseI TTAA 2 cut(s) 32, 122
MspCI CTTAAG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 152, 251
NdeII GATC 3 cut(s) 222, 341, 535
NlaIII CATG 2 cut(s) 13, 420
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 13
NspV TTCGAA 1 cut(s) 272
PciI ACATGT 1 cut(s) 9
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PscI ACATGT 1 cut(s) 9
PshBI ATTAAT 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 541
PspFI CCCAGC 2 cut(s) 336, 425
PspGI CCWGG 1 cut(s) 541
PspPI GGNCC 2 cut(s) 218, 308
RsaI GTAC 3 cut(s) 114, 127, 263
RsaNI GTAC 3 cut(s) 113, 126, 262
SaqAI TTAA 2 cut(s) 32, 122
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 3 cut(s) 222, 341, 535
Sau96I GGNCC 2 cut(s) 218, 308
ScaI AGTACT 2 cut(s) 114, 127
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 1 cut(s) 189
SetI ASST 9 cut(s) 90, 107, 134, 199, 210, 287, 367, 435, 533
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 121, 141
SmoI CTYRAG 2 cut(s) 121, 141
Sse9I AATT 3 cut(s) 29, 371, 466
SsiI CCGC 2 cut(s) 245, 357
SspMI CTAG 3 cut(s) 198, 489, 571
StyD4I CCNGG 1 cut(s) 541
TaaI ACNGT 2 cut(s) 241, 317
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 38, 272
TasI AATT 3 cut(s) 29, 371, 466
TatI WGTACW 2 cut(s) 112, 125
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 32, 122
Tru9I TTAA 2 cut(s) 32, 122
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 427
Vha464I CTTAAG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 32
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 13
XspI CTAG 3 cut(s) 198, 489, 571
ZrmI AGTACT 2 cut(s) 114, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.