Prupe.8G153900_v2.0.a1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000259
Physical Location & Seq
Reverse (-)
16600224 .. 16600740
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G153900.1

Sequence Viewer

Length: 483 bp
ATGGCGTTCAACATCAAGCTTCTTCTGGCCATCTGCTCGGTTGCATTGTTCTTCACTCTTGTCTCTGCAGACCTTTCCAAAGAAGATATCGATGGCTTCGTGGAGGAACACAACAAGGCCCGCGCCCAGGTCGGCAACCGTCCACTCAAATGGAACGCGACCCTAGCCAAGTATGCCCAAGATTATGCAGACAAGAGAGTTGATGACTGCGCCATGGAGCACTCAATGGGGCCTTATGGTGAGAACTTGGCCTCAGGAGAAGGCATGTCTGGAGCAGCTGCCGCCAAGTATTGGGTCACTGAGAAGGAGTTTTATGACTACGACCTAAACAAATGCGTCCGAGACGAATGTGGACATTACCTTGGTGTGATTTGGGGCAAAACCACCGAAGTTGGTTGTGGCATTTCAAAGTGCAAGAATGGACTAAACTATGTCATCTGCAACTATGATCCTGCTTATAATGAGGAGGACCATCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

161

Amino Acids

17.87

Weight (kDa)

4.94

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 291
AccII CGCG 2 cut(s) 123, 158
AciI CCGC 2 cut(s) 121, 282
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 127, 291
AgsI TTSAA 2 cut(s) 10, 408
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 19, 278
AluI AGCT 2 cut(s) 19, 278
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 67, 336
AlwI GGATC 1 cut(s) 443
AoxI GGCC 4 cut(s) 27, 117, 230, 249
ApeKI GCWGC 2 cut(s) 275, 278
AspLEI GCGC 2 cut(s) 125, 212
AspS9I GGNCC 3 cut(s) 118, 230, 469
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 469
AxyI CCTNAGG 1 cut(s) 253
BalI TGGCCA 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 265, 287
BccI CCATC 3 cut(s) 38, 86, 480
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 67, 336
BfaI CTAG 2 cut(s) 164, 481
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 3 cut(s) 276, 279, 282
BlsI GCNGC 3 cut(s) 277, 280, 283
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 3 cut(s) 118, 230, 469
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 126, 213, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 291
Bse21I CCTNAGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 126, 213, 361
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 2 cut(s) 127, 291
BseMII CTCAG 2 cut(s) 267, 291
BseRI GAGGAG 1 cut(s) 479
BseXI GCAGC 2 cut(s) 265, 287
Bsh1236I CGCG 2 cut(s) 123, 158
BshFI GGCC 4 cut(s) 29, 119, 232, 251
BshVI ATCGAT 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 127, 291
BsmAI GTCTC 2 cut(s) 67, 336
BsmBI CGTCTC 1 cut(s) 336
BsnI GGCC 4 cut(s) 29, 119, 232, 251
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 448
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 2 cut(s) 121, 282
BspANI GGCC 4 cut(s) 29, 119, 232, 251
BspCNI CTCAG 2 cut(s) 266, 292
BspDI ATCGAT 1 cut(s) 90
BspFNI CGCG 2 cut(s) 123, 158
BspLI GGNNCC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 443
BssECI CCNNGG 3 cut(s) 126, 213, 361
BssMI GATC 1 cut(s) 448
BssT1I CCWWGG 2 cut(s) 213, 361
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 253, 300
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 472
BstFNI CGCG 2 cut(s) 123, 158
BstHHI GCGC 2 cut(s) 125, 212
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 2 cut(s) 67, 336
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 3 cut(s) 164, 173, 281
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 2 cut(s) 123, 158
BstV1I GCAGC 2 cut(s) 265, 287
BstXI CCANNNNNNTGG 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 253
BsuRI GGCC 4 cut(s) 29, 119, 232, 251
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 2 cut(s) 125, 212
Cfr13I GGNCC 3 cut(s) 118, 230, 469
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 2 cut(s) 214, 265
CviJI RGCY 8 cut(s) 19, 29, 96, 119, 167, 232, 251, 278
CviKI_1 RGCY 8 cut(s) 19, 29, 96, 119, 167, 232, 251, 278
DdeI CTNAG 2 cut(s) 253, 300
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 213, 361
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 469
Eco81I CCTNAGG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 2 cut(s) 213, 361
ErhI CCWWGG 2 cut(s) 213, 361
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 2 cut(s) 217, 268
FaiI YATR 9 cut(s) 174, 186, 215, 237, 266, 315, 432, 447, 459
FatI CATG 2 cut(s) 213, 264
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 276, 279, 282
FokI GGATG 1 cut(s) 459
Fsp4HI GCNGC 3 cut(s) 276, 279, 282
FspBI CTAG 2 cut(s) 164, 481
GlaI GCGC 2 cut(s) 124, 211
GluI GCNGC 3 cut(s) 276, 279, 282
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 4 cut(s) 29, 119, 232, 251
HgaI GACGC 1 cut(s) 325
HhaI GCGC 2 cut(s) 125, 212
Hin1II CATG 2 cut(s) 217, 268
Hin6I GCGC 2 cut(s) 123, 210
HinP1I GCGC 2 cut(s) 123, 210
HindIII AAGCTT 1 cut(s) 17
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 143, 353
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 2 cut(s) 255, 270
Hpy8I GTNNAC 2 cut(s) 143, 353
HpyAV CCTTC 2 cut(s) 254, 298
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 5 cut(s) 44, 68, 188, 414, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 173, 281
HpyF3I CTNAG 2 cut(s) 253, 300
Hsp92II CATG 2 cut(s) 217, 268
HspAI GCGC 2 cut(s) 123, 210
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 2 cut(s) 217, 272
LpnPI CCDG 6 cut(s) 11, 113, 140, 240, 255, 465
Lsp1109I GCAGC 2 cut(s) 265, 287
MaeI CTAG 2 cut(s) 164, 481
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 3 cut(s) 14, 43, 95
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MnlI CCTC 4 cut(s) 97, 262, 457, 460
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 148
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 2 cut(s) 123, 158
MwoI GCNNNNNNNGC 3 cut(s) 164, 173, 281
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 448
NlaIII CATG 2 cut(s) 217, 268
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 3 cut(s) 277, 280, 283
PsiI TTATAA 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 3 cut(s) 118, 230, 469
PstI CTGCAG 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 148
SatI GCNGC 3 cut(s) 276, 279, 282
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 3 cut(s) 118, 230, 469
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 21, 75, 132, 280, 327, 363
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 148
SsiI CCGC 2 cut(s) 121, 282
SspMI CTAG 2 cut(s) 164, 481
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 2 cut(s) 213, 361
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 90
TauI GCSGC 1 cut(s) 284
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 275, 278
Tsp45I GTSAC 1 cut(s) 295
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 469
XceI RCATGY 1 cut(s) 268
XspI CTAG 2 cut(s) 164, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.