Prupe.8G104000_v2.0.a1

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000259
Physical Location & Seq
Forward (+)
13470448 .. 13471246
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G104000.1

Sequence Viewer

Length: 486 bp
ATGGCGTTCAACACGAAGCTTCTTTTGGCCATTTGCTGCGTCGCATTGGTCTTCACTCTTGTCTCTGCAAACATTTCTAAAGAAGAGATCGATGGCTTCGTCGAGGAGCACAACAAGGCTCGTAAAGAGGTCGGCAACAAACCCCTCAAGTGGAACACGACCTTGGCCCAGTATGCCCAAGAATATGCGGATAAAAGAGTTGGTGACTGCGCCATGGAGCACTCGATGGGGCGTTGGGGTGAGAACTTGGCCTCCGGCGACGGCATGAGCGGCGCAGCTGCCACCAAGTATTGGGTCACCGAGAAGGAGTTCTATGATGAAAAGTCCAACAAATGCGTCAAAGACGAATGCGGTCACTACCTTGCTGTGGTATGGGGCAAAACCACTGAGGTTGGATGTGGCATTTCAAAGTGCAACAATGGACAGAACTATGTGGTTTGCAGCTACGATCCCATGTACCAGCCCGAGGACGAGCGCCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

5.26

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 3 cut(s) 188, 270, 351
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 4 cut(s) 150, 291, 367, 466
AgsI TTSAA 2 cut(s) 10, 408
AjuI GAANNNNNNNTTGG 4 cut(s) 8, 40, 146, 178
AloI GAACNNNNNNTCC 2 cut(s) 236, 268
AluBI AGCT 3 cut(s) 19, 278, 444
AluI AGCT 3 cut(s) 19, 278, 444
Alw21I GWGCWC 2 cut(s) 111, 222
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 3 cut(s) 27, 165, 249
ApeKI GCWGC 4 cut(s) 36, 275, 278, 441
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 3 cut(s) 212, 275, 477
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 215, 251, 289
AvaI CYCGRG 1 cut(s) 464
BalI TGGCCA 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 111, 222
BbvI GCAGC 4 cut(s) 23, 265, 287, 453
BccI CCATC 2 cut(s) 86, 220
BceAI ACGGC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 478
BisI GCNGC 5 cut(s) 37, 271, 276, 279, 442
BlsI GCNGC 5 cut(s) 38, 272, 277, 280, 443
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 162, 213, 465
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 291, 367, 466
Bse1I ACTGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 162, 213, 465
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 4 cut(s) 150, 291, 367, 466
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 4 cut(s) 23, 265, 287, 453
BshFI GGCC 3 cut(s) 29, 167, 251
BshVI ATCGAT 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 111, 222
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 4 cut(s) 150, 291, 367, 466
BsmAI GTCTC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 3 cut(s) 29, 167, 251
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 111, 222
Bsp143I GATC 2 cut(s) 87, 448
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 3 cut(s) 188, 270, 351
BspANI GGCC 3 cut(s) 29, 167, 251
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 90
BspPI GGATC 1 cut(s) 443
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 3 cut(s) 162, 213, 465
BssMI GATC 2 cut(s) 87, 448
BssT1I CCWWGG 2 cut(s) 162, 213
Bst6I CTCTTC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 213
BstEII GGTNACC 1 cut(s) 295
BstF5I GGATG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 3 cut(s) 212, 275, 477
BstKTI GATC 2 cut(s) 90, 451
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 87, 448
BstMWI GCNNNNNNNGC 2 cut(s) 173, 270
BstPI GGTNACC 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 23, 265, 287, 453
BstV2I GAAGAC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 3 cut(s) 29, 167, 251
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 384
CfoI GCGC 3 cut(s) 212, 275, 477
Cfr13I GGNCC 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 90
CseI GACGC 2 cut(s) 28, 325
Csp6I GTAC 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 3 cut(s) 214, 265, 454
CviJI RGCY 9 cut(s) 19, 29, 96, 119, 167, 251, 278, 444, 463
CviKI_1 RGCY 9 cut(s) 19, 29, 96, 119, 167, 251, 278, 444, 463
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 387
DpnI GATC 2 cut(s) 89, 450
DpnII GATC 2 cut(s) 87, 448
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 162, 213
Eco88I CYCGRG 1 cut(s) 464
Eco91I GGTNACC 1 cut(s) 295
EcoO65I GGTNACC 1 cut(s) 295
EcoT14I CCWWGG 2 cut(s) 162, 213
ErhI CCWWGG 2 cut(s) 162, 213
FaeI CATG 3 cut(s) 217, 268, 457
FaiI YATR 8 cut(s) 174, 186, 215, 266, 315, 373, 432, 455
FatI CATG 3 cut(s) 213, 264, 453
Fnu4HI GCNGC 5 cut(s) 37, 271, 276, 279, 442
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 5 cut(s) 37, 271, 276, 279, 442
FspBI CTAG 1 cut(s) 484
GlaI GCGC 3 cut(s) 211, 274, 476
GluI GCNGC 5 cut(s) 37, 271, 276, 279, 442
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 3 cut(s) 29, 167, 251
HapII CCGG 1 cut(s) 255
HgaI GACGC 2 cut(s) 28, 325
HhaI GCGC 3 cut(s) 212, 275, 477
Hin1II CATG 3 cut(s) 217, 268, 457
Hin6I GCGC 3 cut(s) 210, 273, 475
HinP1I GCGC 3 cut(s) 210, 273, 475
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 1 cut(s) 255
HphI GGTGA 3 cut(s) 215, 251, 289
Hpy99I CGWCG 3 cut(s) 44, 104, 263
HpyAV CCTTC 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 68, 414, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 270
HpyF3I CTNAG 1 cut(s) 387
Hsp92II CATG 3 cut(s) 217, 268, 457
HspAI GCGC 3 cut(s) 210, 273, 475
Kzo9I GATC 2 cut(s) 87, 448
LmnI GCTCC 2 cut(s) 106, 217
LpnPI CCDG 3 cut(s) 182, 268, 473
Lsp1109I GCAGC 4 cut(s) 23, 265, 287, 453
MaeI CTAG 1 cut(s) 484
MaeIII GTNAC 3 cut(s) 203, 295, 353
MalI GATC 2 cut(s) 89, 450
MbiI CCGCTC 1 cut(s) 270
MboI GATC 2 cut(s) 87, 448
MboII GAAGA 2 cut(s) 43, 95
MhlI GDGCHC 2 cut(s) 111, 222
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 351, 373
MnlI CCTC 6 cut(s) 97, 121, 155, 262, 382, 460
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 173, 270
NcoI CCATGG 1 cut(s) 213
NdeII GATC 2 cut(s) 87, 448
NlaIII CATG 3 cut(s) 217, 268, 457
NmuCI GTSAC 3 cut(s) 203, 295, 353
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 5 cut(s) 38, 272, 277, 280, 443
PspEI GGTNACC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SatI GCNGC 5 cut(s) 37, 271, 276, 279, 442
Sau3AI GATC 2 cut(s) 87, 448
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 2 cut(s) 111, 222
SetI ASST 7 cut(s) 21, 132, 164, 280, 363, 393, 446
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SsiI CCGC 3 cut(s) 188, 270, 351
SspMI CTAG 1 cut(s) 484
StyI CCWWGG 2 cut(s) 162, 213
TaqI TCGA 3 cut(s) 90, 102, 224
TauI GCSGC 1 cut(s) 273
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 3 cut(s) 203, 295, 353
TseI GCWGC 4 cut(s) 36, 275, 278, 441
Tsp45I GTSAC 3 cut(s) 203, 295, 353
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.