Rw6G002560

Basic form of pathogenesis-related protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000259
Physical Location & Seq
Forward (+)
4112108 .. 4112638
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002560.1

Sequence Viewer

Length: 531 bp
ATGGGGTTTAGCAAGCTTTTCTTTGGTGTATGCTGCTTAGCAGTAATCGTTATATTTCATGTCTCTCAAGCTACAGTAATTAACAATCCCAACCAAGGCTTCCTTGATGAAGACAACAACAATCCCAACCAAGGCTTCATTGATGAACACAACAAAGCTCGAGCAGAGGTCGGTGTTGGTCCAATGACATGGAACAACACAGTAGCACTGTACGCACAAAAGTATGCCGAGTCAAAAATTGAGACCTGCGAAATGAAGCTTTCTGGAGGACCGTATGGCGAGAGCTTGGCTGAAGGTTATGGTGAAATGACGGGAGCGGAAGCTGTGAAGTCTTGGGTGACGTCAGAGAAGCCTAACTATGACCATGCCTCTAACACATGTGTTAATAATGAATGTTTGCTTTATACACAAGTGGTTTGGCGCGATTCTGTTAATCTTGGTTGTGCTAGGGTCAAGTGTAAAAATGGGCGGGCGTTGGTAGTTTGTAACTATGATCCTCCTGGTAACATTATTGGAGAGCGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

176

Amino Acids

19.34

Weight (kDa)

5.19

Isoelectric Point (pI)

22.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 48 - 164 3.6e-18 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19990
fragaria_vesca FvH4_2g02810 FvH4_2g02820 FvH4_2g02880 FvH4_2g02890
malus_domestica MD05G1110100.v1.1 MD05G1110200.v1.1 MD05G1110300.v1.1 MD08G1133700.v1.1 MD10G1113400.v1.1 MD10G1113500.v1.1 MD10G1113900.v1.1
prunus_persica Prupe.7G159200_v2.0.a1 Prupe.8G104000_v2.0.a1 Prupe.8G104100_v2.0.a1 Prupe.8G104200_v2.0.a1 Prupe.8G104300_v2.0.a1 Prupe.8G153300_v2.0.a1 Prupe.8G153400_v2.0.a1 Prupe.8G153900_v2.0.a1 Prupe.8G154000_v2.0.a1 Prupe.8G154100_v2.0.a1 Prupe.8G154200_v2.0.a1 Prupe.8G154300_v2.0.a1 Prupe.8G154400_v2.0.a1 Prupe.8G154500_v2.0.a1 Prupe.8G154600_v2.0.a1 Prupe.8G154700_v2.0.a1 Prupe.8G154800_v2.0.a1 Prupe.8G154900_v2.0.a1 Prupe.8G155000_v2.0.a1 Prupe.8G246500_v2.0.a1 Prupe.8G246800_v2.0.a1
pyrus_communis pycom05g10570 pycom05g10600
rosa_chinensis RchiOBHm_Chr6g0245241 RchiOBHm_Chr6g0245641 RchiOBHm_Chr6g0247401 RchiOBHm_Chr6g0247411 RchiOBHm_Chr6g0247441 RchiOBHm_Chr6g0247451 RchiOBHm_Chr6g0247481 RchiOBHm_Chr6g0247551 RchiOBHm_Chr6g0247591 RchiOBHm_Chr6g0247601 RchiOBHm_Chr6g0247611 RchiOBHm_Chr6g0247631
rosa_laevigata RLG00000010111 RLG00000015191 RLG00000015192 RLG00000015193 RLG00000015194 RLG00000015195 RLG00000015196 RLG00000015198 RLG00000015199 RLG00000015298 RLG00000015314
rosa_multiflora Rmu_sc0000147.1_g000053 Rmu_sc0000147.1_g000062 Rmu_sc0000147.1_g000081 Rmu_sc0000147.1_g000086 Rmu_sc0000147.1_g000087 Rmu_sc0000147.1_g000092 Rmu_sc0000147.1_g000099 Rmu_sc0000391.1_g000005 Rmu_sc0000391.1_g000011 Rmu_sc0000391.1_g000016 Rmu_sc0000391.1_g000027 Rmu_sc0001288.1_g000008 Rmu_sc0001341.1_g000002 Rmu_sc0003092.1_g000038 Rmu_sc0003092.1_g000050 Rmu_sc0003092.1_g000053 Rmu_sc0012746.1_g000003 Rmu_sc0016035.1_g000006 Rmu_sc0041002.1_g000001
rosa_roxburghii Rroxscaffold_180G00433420 Rroxscaffold_180G00433430 Rroxscaffold_180G00433450 Rroxscaffold_180G00433460 Rroxscaffold_180G00433480 Rroxscaffold_7G00213880 Rroxscaffold_7G00213890 Rroxscaffold_7G00213910 Rroxscaffold_7G00213920 Rroxscaffold_7G00213930 Rroxscaffold_7G00213940 Rroxscaffold_7G00213990 Rroxscaffold_7G00215210 Rroxscaffold_7G00215340
rosa_rugosa Rorug05G0513000 Rorug05G0515200 Rorug05G0526100 Rorug05G0526200 Rorug05G0526300 Rorug05G0526400 Rorug05G0526600 Rorug05G0526700.1 Rorug05G0526900 Rorug05G0527100 Rorug05G0527300
rosa_samantha Rh1DG283900 Rh6BG024300 Rh6BG027300 Rh6BG035500 Rh6BG035600 Rh6BG035800 Rh6BG036100 Rh6BG036200 Rh6BG036400 Rh6BG036600 Rh6BG036900 Rh6CG026600 Rh6CG035200 Rh6CG035500 Rh6CG035600 Rh6CG035700 Rh6CG035800 Rh6CG035900 Rh6CG036000 Rh6CG036100
rosa_wichuraiana Rw6G002370 Rw6G002560 Rw6G003490 Rw6G003500 Rw6G003510 Rw6G003530 Rw6G003550 Rw6G003560 Rw6G003580 Rw6G003600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 317
AccII CGCG 1 cut(s) 423
AciI CCGC 2 cut(s) 317, 469
AclWI GGATC 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 95, 131
AflIII ACRYGT 1 cut(s) 377
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 119, 151
AluBI AGCT 6 cut(s) 16, 71, 158, 259, 285, 323
AluI AGCT 6 cut(s) 16, 71, 158, 259, 285, 323
Alw26I GTCTC 2 cut(s) 67, 236
AlwI GGATC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 179, 269
AsuHPI GGTGA 2 cut(s) 314, 349
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 2 cut(s) 179, 269
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 67, 236
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 254
BisI GCNGC 1 cut(s) 34
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 2 cut(s) 179, 269
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 179, 269
BmrFI CCNGG 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 94, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 131
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 94, 130
BseLI CCNNNNNNNGG 2 cut(s) 95, 131
BseXI GCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 95, 131
BsmAI GTCTC 2 cut(s) 67, 236
BsmFI GGGAC 1 cut(s) 507
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 159
Bsp143I GATC 1 cut(s) 493
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 2 cut(s) 317, 469
BspFNI CGCG 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 94, 130
BssMI GATC 1 cut(s) 493
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 94, 130
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 4 cut(s) 76, 202, 210, 273
BstACI GRCGYC 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 14, 471
BstDEI CTNAG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 2 cut(s) 67, 236
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 117
BstXI CCANNNNNNTGG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 14, 471
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 2 cut(s) 179, 269
CseI GACGC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 211
CviAII CATG 4 cut(s) 59, 189, 365, 378
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 94, 130
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 179, 269
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 94, 130
ErhI CCWWGG 2 cut(s) 94, 130
FaeI CATG 4 cut(s) 62, 192, 368, 381
FalI AAGNNNNNCTT 3 cut(s) 37, 87, 119
FaqI GGGAC 1 cut(s) 507
FatI CATG 4 cut(s) 58, 188, 364, 377
FauI CCCGC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 447
GlaI GCGC 1 cut(s) 422
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 285
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 4 cut(s) 62, 192, 368, 381
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 2 cut(s) 14, 257
HinfI GANTC 2 cut(s) 230, 425
HphI GGTGA 2 cut(s) 314, 349
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 4 cut(s) 76, 202, 210, 273
HpyCH4IV ACGT 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 341
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 4 cut(s) 62, 192, 368, 381
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 4 cut(s) 249, 259, 486, 513
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 447
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 3 cut(s) 337, 485, 503
MalI GATC 1 cut(s) 495
MbiI CCGCTC 1 cut(s) 317
MboI GATC 1 cut(s) 493
MboII GAAGA 1 cut(s) 122
MluCI AATT 2 cut(s) 78, 237
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 4 cut(s) 160, 260, 379, 507
MseI TTAA 3 cut(s) 81, 384, 432
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 493
NlaIII CATG 4 cut(s) 62, 192, 368, 381
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 381
PaeR7I CTCGAG 1 cut(s) 159
PciI ACATGT 1 cut(s) 377
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PscI ACATGT 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspPI GGNCC 2 cut(s) 179, 269
PspXI VCTCGAGB 1 cut(s) 159
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 81, 384, 432
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 2 cut(s) 179, 269
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 501
SfcI CTRYAG 1 cut(s) 72
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 2 cut(s) 179, 269
SlaI CTCGAG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 66, 159
SmoI CTYRAG 2 cut(s) 66, 159
Sse9I AATT 2 cut(s) 78, 237
SsiI CCGC 2 cut(s) 317, 469
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 2 cut(s) 94, 130
TaaI ACNGT 4 cut(s) 76, 202, 210, 273
TaiI ACGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 78, 237
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 81, 384, 432
Tru9I TTAA 3 cut(s) 81, 384, 432
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 6 cut(s) 47, 123, 127, 159, 269, 405
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 2 cut(s) 179, 269
XceI RCATGY 1 cut(s) 381
XhoI CTCGAG 1 cut(s) 159
XspI CTAG 1 cut(s) 447
ZraI GACGTC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.