Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

17704741 .. 17709060

Gene Structure 4320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGAGTGCATCATGGGCTGATGTAGCTGACTCAGAGAACACGGGTTCTGGGTCTTCTAATCAGAATTCTCATCCTTCACGACCTGCTTATGTTCCTCCACATCTAAGGAACAGGCCAGCAGCTTCTGAGCCTGTTGCTCCATTGCCAGCTAATGATCGTGTAGGTTATGGTGGTCCACCTTCTGGCTCTCGATGGGCTCCTGGTGGTAGTGGTGTTGGTGTTGGAGGTGGTGGTGGTTATAGGGCTGATGCAGGTCGTCCTGGCTCTGGCTCTGGCTATGGTGGACGAGGAGGTGGTGGTTGGAACAACAGAAGCGGAGGGTGGGACCGTAGGGAACGTGAAGTAAACCCCTTTGAAAATGATGATTCCGAACCAGAACCAGCTTTTACTGAGCAGGATAATACGGTTATTAATTTTGATGCCTATGAAGATATTCCGATTGAGACCAGTGGGGATAATGTGCCTCCTCCTGTTAACACATTCGCAGAGATAGATCTCGGGGAGGCATTGAATCTAAATATCCGTAGATGCAAATATGTTAAGCCAACACCTGTTCAGCGTCATGCGATTCCGATATTGCTTGAAGGGAGGGATTTGATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCTTTTTGCTTTCCAATCATTAGTGGAATAATGAAAGATCAGCATGTACAGAGACCCCGTGGTTCACGAACAGTCTACCCTCTTGCAGTTATTCTCTCACCAACAAGAGAGTTGGCAAGTCAGATACATGATGAGGCTAAAAAGTTCTCTTACCAAACTGGTGTGAAGGTGGTTGTTGCATATGGAGGAACACCTATTAACCAGCAGCTCCGGGAACTTGAGAGGGGAGTCGATATTCTTGTGGCAACGCCTGGTCGATTAAATGATTTGCTCGAGAGAGCTAGAGTCTCAATGCAGATGATTAGATTTTTAGCTCTTGATGAGGCCGATAGAATGCTTGACATGGGTTTTGAACCACAAATTAGAAAGATTGTCGAACAAATGGACATGCCTCCACGTGGAGTTAGACAGACACTGTTGTTTAGTGCTACATTTCCAAGAGAAATTCAGAGACTCGCAGCTGACTTCCTAGCAAATTATATATTTTTGGCTGTGGGTAGAGTGGGTTCAAGTACCGATTTAATTGTCCAAAGGGTTGAGTTTGTCCTTGACTCTGACAAAAGAAGTCATCTCATGGACCTGCTTCACGCTCAGAGAGAGAATGGCATCCAAGGCAAGCAAGCCCTGACCTTAGTTTTTGTGGAGACAAAGAGAGGAGCTGACTCTTTGGAAAATTGGTTGTGCATCAATGGGTTTCCAGCAACCTCCATTCACGGTGACAGAACACAGCAGGAAAGAGAAGTGGCATTGAAAGCCTTCAAGAGTGGGAGAACACCGATTTTGGTTGCAACTGATGTAGCAGCACGTGGCCTTGACATTCCCCACGTGGCTCATGTGGTCAACTTCGATCTGCCAAATGACATTGATGACTATGTCCACCGTATTGGACGAACAGGACGTGCTGGCAAATCAGGACTAGCAACTGCCTTCTTCAACGATGGCAACACCTCACTGGCCAGACCGCTCGCTGAGCTGATGCAAGAAGCTAACCAAGAAGTCCCTGAGTGGCTCACTCGGTATGCGTCACGGTCCTCTTTTGGTGGTGGTAAGAACCGGCGGTCTGGTGGTCGATTTGGTGGCCGTGACTTTAGAAGGGAAGGGTCTTTCGGTAGCGGTAGAGGAGGCTATGGCGGTGGAGGAGGAGGGTATGGCGGCGGAGGAGGCTATGGTGGTGGAGGAGGCTATGGCGGCGGAGGAGGCTATGGTGGTGGATATGGTGGTGCTTCAAGTGGTGGATATGGTGGAGAACCTCCAAGTGCTTGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

633

Amino Acids

67.63

Weight (kDa)

6.63

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	183 - 362	9.6e-51	DEAD/DEAH box helicase
Helicase_C	PF00271	399 - 513	1.4e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	91, 242, 1221
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	1597
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	9 cut(s)	315, 1595, 1690, 1746, 1764, 1785, 1788, 1821, 1824
AcoI	YGGCCR	2 cut(s)	1587, 1711
AcsI	RAATTY	2 cut(s)	64, 1077
AcvI	CACGTG	3 cut(s)	1031, 1439, 1459
AfaI	GTAC	2 cut(s)	681, 1147
AfiI	CCNNNNNNNGG	3 cut(s)	182, 266, 1031
AgsI	TTSAA	9 cut(s)	356, 511, 584, 986, 1143, 1384, 1393, 1567, 1860
AjiI	CACGTC	1 cut(s)	1532
AjnI	CCWGG	3 cut(s)	199, 259, 883
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	5 cut(s)	437, 679, 925, 1078, 1271
AlwNI	CAGNNNCTG	2 cut(s)	125, 1048
Ama87I	CYCGRG	2 cut(s)	497, 905
AoxI	GGCC	6 cut(s)	113, 600, 957, 1441, 1587, 1711
ApeKI	GCWGC	5 cut(s)	119, 632, 838, 1091, 1433
ApoI	RAATTY	2 cut(s)	64, 1077
ArsI	GACNNNNNNTTYG	2 cut(s)	965, 997
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	2 cut(s)	432, 1388
AspS9I	GGNCC	4 cut(s)	173, 325, 1210, 1662
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	2 cut(s)	723, 1361
AvaI	CYCGRG	2 cut(s)	497, 905
AvaII	GGWCC	4 cut(s)	173, 325, 1210, 1662
BalI	TGGCCA	1 cut(s)	1589
BanII	GRGCYC	1 cut(s)	199
BbrPI	CACGTG	3 cut(s)	1031, 1439, 1459
BbsI	GAAGAC	2 cut(s)	45, 632
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	5 cut(s)	131, 619, 850, 1103, 1445
BccI	CCATC	3 cut(s)	186, 592, 1565
BceAI	ACGGC	1 cut(s)	1698
BciT130I	CCWGG	3 cut(s)	201, 261, 885
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	5 cut(s)	437, 679, 925, 1078, 1271
BfaI	CTAG	3 cut(s)	915, 1103, 1550
BfuAI	ACCTGC	3 cut(s)	91, 242, 1221
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	7 cut(s)	120, 633, 839, 1092, 1434, 1786, 1822
BlpI	GCTNAGC	1 cut(s)	1602
BlsI	GCNGC	7 cut(s)	121, 634, 840, 1093, 1435, 1787, 1823
Bme1390I	CCNGG	4 cut(s)	201, 261, 845, 885
Bme18I	GGWCC	4 cut(s)	173, 325, 1210, 1662
BmeT110I	CYCGRG	2 cut(s)	497, 905
BmgBI	CACGTC	1 cut(s)	1532
BmgT120I	GGNCC	4 cut(s)	173, 325, 1210, 1662
BmiI	GGNNCC	2 cut(s)	198, 326
BmrFI	CCNGG	4 cut(s)	201, 261, 845, 885
BmsI	GCATC	7 cut(s)	17, 238, 409, 518, 1248, 1326, 1599
BpiI	GAAGAC	2 cut(s)	45, 632
Bpu1102I	GCTNAGC	1 cut(s)	1602
BpuEI	CTTGAG	1 cut(s)	872
BpuMI	CCSGG	1 cut(s)	845
BsaAI	YACGTR	3 cut(s)	1031, 1439, 1459
BsaI	GGTCTC	2 cut(s)	437, 679
BsaJI	CCNNGG	2 cut(s)	691, 1243
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 266, 1031
Bse118I	RCCGGY	1 cut(s)	1686
Bse1I	ACTGG	3 cut(s)	447, 796, 1590
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	3 cut(s)	201, 261, 885
BseDI	CCNNGG	2 cut(s)	691, 1243
BseGI	GGATG	2 cut(s)	70, 1239
BseLI	CCNNNNNNNGG	3 cut(s)	182, 266, 1031
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	7 cut(s)	45, 117, 381, 623, 1238, 1593, 1626
BseNI	ACTGG	3 cut(s)	447, 796, 1590
BseRI	GAGGAG	9 cut(s)	303, 456, 1302, 1767, 1785, 1788, 1806, 1824, 1842
BseXI	GCAGC	5 cut(s)	131, 619, 850, 1103, 1445
BshFI	GGCC	6 cut(s)	115, 602, 959, 1443, 1589, 1713
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	2 cut(s)	497, 905
BsiSI	CCGG	2 cut(s)	844, 1687
BslFI	GGGAC	2 cut(s)	338, 1616
BslI	CCNNNNNNNGG	3 cut(s)	182, 266, 1031
BsmAI	GTCTC	5 cut(s)	437, 679, 925, 1078, 1271
BsmFI	GGGAC	2 cut(s)	338, 1616
BsmI	GAATGC	1 cut(s)	972
BsnI	GGCC	6 cut(s)	115, 602, 959, 1443, 1589, 1713
Bso31I	GGTCTC	2 cut(s)	437, 679
BsoBI	CYCGRG	2 cut(s)	497, 905
Bsp1286I	GDGCHC	2 cut(s)	199, 610
Bsp1407I	TGTACA	1 cut(s)	679
Bsp143I	GATC	4 cut(s)	154, 493, 670, 1480
Bsp1720I	GCTNAGC	1 cut(s)	1602
BspACI	CCGC	9 cut(s)	315, 1595, 1690, 1746, 1764, 1785, 1788, 1821, 1824
BspANI	GGCC	6 cut(s)	115, 602, 959, 1443, 1589, 1713
BspCNI	CTCAG	7 cut(s)	44, 118, 382, 622, 1237, 1594, 1627
BspLI	GGNNCC	2 cut(s)	198, 326
BspMI	ACCTGC	3 cut(s)	91, 242, 1221
BspTNI	GGTCTC	2 cut(s)	437, 679
BsrBI	CCGCTC	1 cut(s)	1597
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	1686
BsrGI	TGTACA	1 cut(s)	679
BsrI	ACTGG	3 cut(s)	447, 796, 1590
BssAI	RCCGGY	1 cut(s)	1686
BssECI	CCNNGG	2 cut(s)	691, 1243
BssMI	GATC	4 cut(s)	154, 493, 670, 1480
BssT1I	CCWWGG	1 cut(s)	1243
Bst2UI	CCWGG	3 cut(s)	201, 261, 885
Bst4CI	ACNGT	7 cut(s)	329, 406, 706, 1050, 1349, 1514, 1662
BstAUI	TGTACA	1 cut(s)	679
BstBAI	YACGTR	3 cut(s)	1031, 1439, 1459
BstC8I	GCNNGC	6 cut(s)	117, 147, 1250, 1254, 1537, 1599
BstDEI	CTNAG	9 cut(s)	31, 104, 126, 390, 609, 1224, 1264, 1602, 1635
BstDSI	CCRYGG	1 cut(s)	691
BstF5I	GGATG	2 cut(s)	70, 1239
BstKTI	GATC	4 cut(s)	157, 496, 673, 1483
BstMAI	GTCTC	5 cut(s)	437, 679, 925, 1078, 1271
BstMBI	GATC	4 cut(s)	154, 493, 670, 1480
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 23, 1245, 1385, 1603, 1794, 1821, 1830
BstNI	CCWGG	3 cut(s)	201, 261, 885
BstNSI	RCATGY	2 cut(s)	680, 1024
BstSCI	CCNGG	4 cut(s)	199, 259, 843, 883
BstV1I	GCAGC	5 cut(s)	131, 619, 850, 1103, 1445
BstV2I	GAAGAC	2 cut(s)	45, 632
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	2 cut(s)	1517, 1893
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	6 cut(s)	115, 602, 959, 1443, 1589, 1713
BtgI	CCRYGG	1 cut(s)	691
BtrI	CACGTC	1 cut(s)	1532
BtsCI	GGATG	2 cut(s)	70, 1239
BtsIMutI	CAGTG	3 cut(s)	454, 1046, 1583
BveI	ACCTGC	3 cut(s)	91, 242, 1221
Cac8I	GCNNGC	6 cut(s)	117, 147, 1250, 1254, 1537, 1599
CaiI	CAGNNNCTG	2 cut(s)	125, 1048
Cfr10I	RCCGGY	1 cut(s)	1686
Cfr13I	GGNCC	4 cut(s)	173, 325, 1210, 1662
CseI	GACGC	2 cut(s)	548, 1644
Csp6I	GTAC	2 cut(s)	680, 1146
CviAII	CATG	8 cut(s)	12, 563, 677, 761, 976, 1021, 1207, 1466
CviQI	GTAC	2 cut(s)	680, 1146
DdeI	CTNAG	9 cut(s)	31, 104, 126, 390, 609, 1224, 1264, 1602, 1635
DpnI	GATC	4 cut(s)	156, 495, 672, 1482
DpnII	GATC	4 cut(s)	154, 493, 670, 1480
EaeI	YGGCCR	2 cut(s)	1587, 1711
EciI	GGCGGA	2 cut(s)	1803, 1839
Eco130I	CCWWGG	1 cut(s)	1243
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	2 cut(s)	437, 679
Eco47I	GGWCC	4 cut(s)	173, 325, 1210, 1662
Eco72I	CACGTG	3 cut(s)	1031, 1439, 1459
Eco88I	CYCGRG	2 cut(s)	497, 905
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	3 cut(s)	199, 259, 883
EcoT14I	CCWWGG	1 cut(s)	1243
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	1243
FaeI	CATG	8 cut(s)	15, 566, 680, 764, 979, 1024, 1210, 1469
FaqI	GGGAC	2 cut(s)	338, 1616
FatI	CATG	8 cut(s)	11, 562, 676, 760, 975, 1020, 1206, 1465
FauNDI	CATATG	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	7 cut(s)	120, 633, 839, 1092, 1434, 1786, 1822
FokI	GGATG	2 cut(s)	57, 1226
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	7 cut(s)	120, 633, 839, 1092, 1434, 1786, 1822
FspBI	CTAG	3 cut(s)	915, 1103, 1550
GluI	GCNGC	7 cut(s)	120, 633, 839, 1092, 1434, 1786, 1822
HaeIII	GGCC	6 cut(s)	115, 602, 959, 1443, 1589, 1713
HapII	CCGG	2 cut(s)	844, 1687
HgaI	GACGC	2 cut(s)	548, 1644
Hin1II	CATG	8 cut(s)	15, 566, 680, 764, 979, 1024, 1210, 1469
HincII	GTYRAC	2 cut(s)	475, 1474
HindII	GTYRAC	2 cut(s)	475, 1474
HinfI	GANTC	9 cut(s)	29, 365, 511, 568, 861, 918, 1086, 1184, 1295
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	2 cut(s)	844, 1687
HphI	GGTGA	2 cut(s)	723, 1361
Hpy166II	GTNNAC	8 cut(s)	176, 284, 346, 475, 698, 709, 1474, 1510
Hpy188III	TCNNGA	7 cut(s)	78, 189, 699, 907, 950, 1393, 1545
Hpy8I	GTNNAC	8 cut(s)	176, 284, 346, 475, 698, 709, 1474, 1510
HpyAV	CCTTC	8 cut(s)	84, 189, 578, 793, 1399, 1570, 1719, 1724
HpyCH4III	ACNGT	7 cut(s)	329, 406, 706, 1050, 1349, 1514, 1662
HpyCH4IV	ACGT	5 cut(s)	337, 1030, 1438, 1458, 1531
HpyCH4V	TGCA	9 cut(s)	8, 251, 531, 719, 812, 928, 1317, 1421, 1612
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 23, 1245, 1385, 1603, 1794, 1821, 1830
HpyF3I	CTNAG	9 cut(s)	31, 104, 126, 390, 609, 1224, 1264, 1602, 1635
HpySE526I	ACGT	5 cut(s)	337, 1030, 1438, 1458, 1531
Hsp92II	CATG	8 cut(s)	15, 566, 680, 764, 979, 1024, 1210, 1469
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	154, 493, 670, 1480
LmnI	GCTCC	4 cut(s)	142, 202, 846, 1289
Lsp1109I	GCAGC	5 cut(s)	131, 619, 850, 1103, 1445
LweI	GCATC	7 cut(s)	17, 238, 409, 518, 1248, 1326, 1599
MaeI	CTAG	3 cut(s)	915, 1103, 1550
MaeII	ACGT	5 cut(s)	337, 1030, 1438, 1458, 1531
MaeIII	GTNAC	3 cut(s)	1349, 1656, 1715
MalI	GATC	4 cut(s)	156, 495, 672, 1482
MbiI	CCGCTC	1 cut(s)	1597
MboI	GATC	4 cut(s)	154, 493, 670, 1480
MboII	GAAGA	4 cut(s)	45, 440, 637, 1555
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	199, 610
MlsI	TGGCCA	1 cut(s)	1589
MluCI	AATT	7 cut(s)	64, 412, 993, 1077, 1108, 1155, 1306
MluNI	TGGCCA	1 cut(s)	1589
MlyI	GAGTC	6 cut(s)	23, 870, 927, 1080, 1178, 1289
MmeI	TCCRAC	2 cut(s)	202, 281
Mox20I	TGGCCA	1 cut(s)	1589
MroXI	GAANNNNTTC	2 cut(s)	432, 1388
MscI	TGGCCA	1 cut(s)	1589
MseI	TTAA	6 cut(s)	411, 474, 540, 831, 893, 1154
Msp20I	TGGCCA	1 cut(s)	1589
MspA1I	CMGCKG	2 cut(s)	632, 1094
MspI	CCGG	2 cut(s)	844, 1687
MspR9I	CCNGG	4 cut(s)	201, 261, 845, 885
Mva1269I	GAATGC	1 cut(s)	972
MvaI	CCWGG	3 cut(s)	201, 261, 885
MwoI	GCNNNNNNNGC	8 cut(s)	14, 23, 1245, 1385, 1603, 1794, 1821, 1830
NciI	CCSGG	1 cut(s)	845
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	4 cut(s)	154, 493, 670, 1480
NlaIII	CATG	8 cut(s)	15, 566, 680, 764, 979, 1024, 1210, 1469
NlaIV	GGNNCC	2 cut(s)	198, 326
NmuCI	GTSAC	3 cut(s)	1349, 1656, 1715
NspI	RCATGY	2 cut(s)	680, 1024
PaeR7I	CTCGAG	1 cut(s)	905
PcsI	WCGNNNNNNNCGW	1 cut(s)	1528
PctI	GAATGC	1 cut(s)	972
PdmI	GAANNNNTTC	2 cut(s)	432, 1388
PfeI	GAWTC	3 cut(s)	365, 511, 568
PflFI	GACNNNGTC	2 cut(s)	616, 1505
PflMI	CCANNNNNTGG	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	843
PkrI	GCNGC	7 cut(s)	121, 634, 840, 1093, 1435, 1787, 1823
PleI	GAGTC	6 cut(s)	23, 869, 926, 1080, 1178, 1289
PmaCI	CACGTG	3 cut(s)	1031, 1439, 1459
PmlI	CACGTG	3 cut(s)	1031, 1439, 1459
PpsI	GAGTC	6 cut(s)	23, 869, 926, 1080, 1178, 1289
Ppu21I	YACGTR	3 cut(s)	1031, 1439, 1459
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	3 cut(s)	199, 259, 883
PspCI	CACGTG	3 cut(s)	1031, 1439, 1459
PspGI	CCWGG	3 cut(s)	199, 259, 883
PspN4I	GGNNCC	2 cut(s)	198, 326
PspPI	GGNCC	4 cut(s)	173, 325, 1210, 1662
PsrI	GAACNNNNNNTAC	2 cut(s)	1123, 1155
PstNI	CAGNNNCTG	2 cut(s)	125, 1048
PsuI	RGATCY	1 cut(s)	493
PsyI	GACNNNGTC	2 cut(s)	616, 1505
PvuII	CAGCTG	2 cut(s)	632, 1094
RsaI	GTAC	2 cut(s)	681, 1147
RsaNI	GTAC	2 cut(s)	680, 1146
SaqAI	TTAA	6 cut(s)	411, 474, 540, 831, 893, 1154
SatI	GCNGC	7 cut(s)	120, 633, 839, 1092, 1434, 1786, 1822
Sau3AI	GATC	4 cut(s)	154, 493, 670, 1480
Sau96I	GGNCC	4 cut(s)	173, 325, 1210, 1662
SchI	GAGTC	6 cut(s)	23, 870, 927, 1080, 1178, 1289
ScrFI	CCNGG	4 cut(s)	201, 261, 845, 885
SduI	GDGCHC	2 cut(s)	199, 610
SfaNI	GCATC	7 cut(s)	17, 238, 409, 518, 1248, 1326, 1599
Sfr274I	CTCGAG	1 cut(s)	905
SinI	GGWCC	4 cut(s)	173, 325, 1210, 1662
SlaI	CTCGAG	1 cut(s)	905
SmlI	CTYRAG	2 cut(s)	851, 905
SmoI	CTYRAG	2 cut(s)	851, 905
Sse9I	AATT	7 cut(s)	64, 412, 993, 1077, 1108, 1155, 1306
SsiI	CCGC	9 cut(s)	315, 1595, 1690, 1746, 1764, 1785, 1788, 1821, 1824
SspMI	CTAG	3 cut(s)	915, 1103, 1550
StyD4I	CCNGG	4 cut(s)	199, 259, 843, 883
StyI	CCWWGG	1 cut(s)	1243
TaaI	ACNGT	7 cut(s)	329, 406, 706, 1050, 1349, 1514, 1662
TaiI	ACGT	5 cut(s)	340, 1033, 1441, 1461, 1534
TaqI	TCGA	7 cut(s)	190, 864, 889, 906, 1008, 1479, 1702
TasI	AATT	7 cut(s)	64, 412, 993, 1077, 1108, 1155, 1306
TatI	WGTACW	1 cut(s)	679
TauI	GCSGC	2 cut(s)	1788, 1824
TfiI	GAWTC	3 cut(s)	365, 511, 568
Tru1I	TTAA	6 cut(s)	411, 474, 540, 831, 893, 1154
Tru9I	TTAA	6 cut(s)	411, 474, 540, 831, 893, 1154
TscAI	CASTG	3 cut(s)	454, 1053, 1590
TseFI	GTSAC	3 cut(s)	1349, 1656, 1715
TseI	GCWGC	5 cut(s)	119, 632, 838, 1091, 1433
Tsp45I	GTSAC	3 cut(s)	1349, 1656, 1715
TspDTI	ATGAA	2 cut(s)	441, 680
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	3 cut(s)	454, 1053, 1590
Tth111I	GACNNNGTC	2 cut(s)	616, 1505
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	4 cut(s)	173, 325, 1210, 1662
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	2 cut(s)	64, 1077
XceI	RCATGY	2 cut(s)	680, 1024
XhoI	CTCGAG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	2 cut(s)	432, 1388
XspI	CTAG	3 cut(s)	915, 1103, 1550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.