Rroxscaffold_2G00148710

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
86284774 .. 86285753
980 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00148710.1

Sequence Viewer

Length: 447 bp
ATGGGTCTTGTTCGTAGGTGGAATGATCTGTTCAACTATGTGAACGAGAATGTCGCAATTAATGAAATACTTGACAACGAAGAATCCACAACAGCTTCAGTAGCAAAGGACTTGGTGCTAGAACACATAAGAAACAATTGTCAGATTGAAGAAGCTGATCGAATTTATGCTCTTCTAGTTGGCTGGCCTCGAGACAAGCCTATGGAAATTCAGTCCATTCATATAGCAGGAAATCAACCTTATGTGGAAGGGATGAGTCCACCAGAAGAAGTACCAGGAGAACCTTCATTTTGGACATGTGGAGCGATATTGGGATCTGGCTCTTCACATGCTTATCCAGTTATGATGGAAGGATTTAGAATCAGTGCCAGAGCCAAGTGTTCTGTGAGGAGGGTGTTTTCTATGGCTGGGGTCAACCTTCTCACCTGGTTTCCATCAAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.6

Weight (kDa)

5.06

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 322
AcsI RAATTY 2 cut(s) 162, 207
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 2 cut(s) 34, 149
AjnI CCWGG 2 cut(s) 274, 425
AluBI AGCT 2 cut(s) 95, 155
AluI AGCT 2 cut(s) 95, 155
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 162, 207
AseI ATTAAT 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 189
BccI CCATC 2 cut(s) 340, 442
BciT130I CCWGG 2 cut(s) 276, 427
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 119, 176
Bme1390I CCNGG 2 cut(s) 276, 427
BmeT110I CYCGRG 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 276, 427
Bse1I ACTGG 1 cut(s) 338
BseBI CCWGG 2 cut(s) 276, 427
BseGI GGATG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 403
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 189
Bsp143I GATC 3 cut(s) 25, 157, 314
BspANI GGCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 322
BspQI GCTCTTC 2 cut(s) 177, 328
BsrI ACTGG 1 cut(s) 338
BssMI GATC 3 cut(s) 25, 157, 314
Bst2UI CCWGG 2 cut(s) 276, 427
Bst6I CTCTTC 2 cut(s) 177, 328
BstC8I GCNNGC 1 cut(s) 185
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 3 cut(s) 28, 160, 317
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 25, 157, 314
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 2 cut(s) 276, 427
BstNSI RCATGY 2 cut(s) 300, 332
BstSCI CCNGG 2 cut(s) 274, 425
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 185
CsiI ACCWGGT 1 cut(s) 425
Csp6I GTAC 1 cut(s) 272
CviAII CATG 2 cut(s) 297, 329
CviJI RGCY 8 cut(s) 95, 155, 183, 187, 199, 321, 374, 407
CviKI_1 RGCY 8 cut(s) 95, 155, 183, 187, 199, 321, 374, 407
CviQI GTAC 1 cut(s) 272
DpnI GATC 3 cut(s) 27, 159, 316
DpnII GATC 3 cut(s) 25, 157, 314
Eam1104I CTCTTC 2 cut(s) 177, 328
EarI CTCTTC 2 cut(s) 177, 328
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 274, 425
FaeI CATG 2 cut(s) 300, 332
FatI CATG 2 cut(s) 296, 328
FokI GGATG 1 cut(s) 265
FspBI CTAG 2 cut(s) 119, 176
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 2 cut(s) 300, 332
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 3 cut(s) 83, 256, 360
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 3 cut(s) 43, 260, 415
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 3 cut(s) 43, 260, 415
HpyAV CCTTC 4 cut(s) 242, 294, 344, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 300, 332
Kzo9I GATC 3 cut(s) 25, 157, 314
LguI GCTCTTC 2 cut(s) 177, 328
LmnI GCTCC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 425
MaeI CTAG 2 cut(s) 119, 176
MalI GATC 3 cut(s) 27, 159, 316
MboI GATC 3 cut(s) 25, 157, 314
MboII GAAGA 5 cut(s) 92, 161, 164, 278, 315
MfeI CAATTG 1 cut(s) 136
MflI RGATCY 1 cut(s) 314
MluCI AATT 4 cut(s) 57, 136, 162, 207
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 3 cut(s) 198, 381, 384
MseI TTAA 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 276, 427
MunI CAATTG 1 cut(s) 136
MvaI CCWGG 2 cut(s) 276, 427
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 3 cut(s) 25, 157, 314
NlaIII CATG 2 cut(s) 300, 332
NspI RCATGY 2 cut(s) 300, 332
PaeR7I CTCGAG 1 cut(s) 189
PciI ACATGT 1 cut(s) 296
PciSI GCTCTTC 2 cut(s) 177, 328
PfeI GAWTC 2 cut(s) 83, 360
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PscI ACATGT 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 274, 425
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 274, 425
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SapI GCTCTTC 2 cut(s) 177, 328
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 3 cut(s) 25, 157, 314
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 276, 427
SetI ASST 7 cut(s) 20, 97, 157, 241, 286, 420, 428
SexAI ACCWGGT 1 cut(s) 425
Sfr274I CTCGAG 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 4 cut(s) 57, 136, 162, 207
SspMI CTAG 2 cut(s) 119, 176
StyD4I CCNGG 2 cut(s) 274, 425
TaqI TCGA 2 cut(s) 160, 190
TasI AATT 4 cut(s) 57, 136, 162, 207
TfiI GAWTC 2 cut(s) 83, 360
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 78, 209, 276
TspRI CASTG 1 cut(s) 370
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 2 cut(s) 162, 207
XceI RCATGY 2 cut(s) 300, 332
XhoI CTCGAG 1 cut(s) 189
XspI CTAG 2 cut(s) 119, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.