Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000684

Physical Location & Seq

Genomic Coordinates Forward (+)

6523329 .. 6540672

Gene Structure 17344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATTGAGAGATCACGAGTTTCCCTCAAAATGATCAAGTATTTAGCAGTAGATGATAGGATGTTGGACATAGGTTTTGAACCTCAGATATCAAAGATTGTTCGACAAATGGACATGCCTCCCCCAGGTGCAAGACAAACTCTGCTTTTCAGTGCTACATTCCCTAATGAGATACAGAGGCTTGCTTCAGAACTCCTCCAAAAATACATATTTTCGACTATTGGAATAGTTGGGAATGGGAACAAGATAAGGAATTTATGTTGTCTTCTTCTTAAGAACCAGAGGGAAATTGAAACTCATGGAAAGGGGGACAAAGGGATAACAAATTTGAAATCAGCTGATGTAGAGGTAGCTCCTGAGAATGCTTTTGGTGAGACTATTATTGAGAGTCAAGAGGAGTTCCTTCAAAAAATCTCTACTCTCAAGGATTGCATCCGGGAAGAGATGGCTAAAGGGACTACAAATATTGCATTCATGACTCGGACGGGGATTACCGCTGCTGTAGATTCCAGAACATGGCATGGCCAATTTATAGCCTATGGAAATTCAGTCCATTCATATAGCAGGAAATCAACCTTATGTGGAACTGTGGAAGGGATGAGTCCACCAGAAGAAGTACTAGAAGAACCTTCATTTTGGACATGTGGAGCGATATTGGGATCTGGCTCTTCACAAGCTTATCCAGTTATGATACGAGGGCCATATGGAGGAGAGATTGATTCAGCAAATTGTGTAGCAGTTAAGAGAGATTTCTACGCTTTTCGTGTGGTATTCAAGACTGAAGAAGATGCTACAATAGCAAATGAAGGTATTATGACCCATCAGTTGCCTGTGGAACTTCGACAGATGCCTCGACCTATGGAAAACAGTTGGTTTCGATCGTTTCGGTATTCTAAATGTGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

302

Amino Acids

33.83

Weight (kDa)

6.47

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	6 - 60	2.3e-07	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42520 AT2G42520 AT2G42520 AT3G58510 AT3G58510 AT3G58510 AT3G58570
fragaria_vesca	FvH4_1g03520 FvH4_1g03520 FvH4_1g03520 FvH4_3g45200 FvH4_3g45200 FvH4_3g45200 FvH4_6g21570
malus_domestica	MD02G1034300.v1.1 MD03G1007400.v1.1 MD11G1010700.v1.1 MD12G1053000.v1.1 MD14G1051400.v1.1 MD15G1175000.v1.1
prunus_persica	Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.6G007000_v2.0.a1 Prupe.7G084600_v2.0.a1 Prupe.7G240900_v2.0.a1
pyrus_communis	pycom02g02800 pycom03g00760 pycom11g00670 pycom12g04630 pycom14g04260 pycom15g15650
rosa_chinensis	RchiOBHm_Chr2g0088731 RchiOBHm_Chr2g0088781 RchiOBHm_Chr2g0088941 RchiOBHm_Chr3g0478811 RchiOBHm_Chr5g0082811
rosa_laevigata	RLG00000015980 RLG00000016349 RLG00000023623 RLG00000036991
rosa_multiflora	Rmu_co8138978.1_g000001 Rmu_co8475903.1_g000001 Rmu_sc0000965.1_g000010 Rmu_sc0001381.1_g000020 Rmu_sc0001519.1_g000001 Rmu_sc0005751.1_g000004 Rmu_sc0011683.1_g000004
rosa_roxburghii	Rroxscaffold_1G00001630 Rroxscaffold_2G00148710 Rroxscaffold_6G00403050
rosa_rugosa	Rorug01G0486600 Rorug03G0168400 Rorug05G0479900 Rorug05G0479900 Rorug05G0479900 Rorug05G0480000
rosa_samantha	Rh2AG041800 Rh2AG076200 Rh2BG040500 Rh2BG077600 Rh2CG041300 Rh2CG041900 Rh2CG079800 Rh2DG040900 Rh2DG074900 Rh3AG220200 Rh3BG252000 Rh3DG245100 Rh5AG530300 Rh5DG565600
rosa_wichuraiana	Rw2G003260 Rw2G006990 Rw3G019790 Rw5G049570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	516
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	3 cut(s)	253, 325, 544
AcuI	CTGAAG	2 cut(s)	171, 801
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	125, 516, 707
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	5 cut(s)	80, 293, 331, 407, 775
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	3 cut(s)	338, 353, 677
AluI	AGCT	3 cut(s)	338, 353, 677
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	667
AoxI	GGCC	2 cut(s)	523, 698
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	3 cut(s)	253, 325, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	525
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	439, 828
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	620, 907
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	126, 437
BmgT120I	GGNCC	1 cut(s)	698
BmrFI	CCNGG	2 cut(s)	126, 437
BmsI	GCATC	3 cut(s)	441, 778, 837
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 516, 707
Bse1I	ACTGG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	3 cut(s)	66, 432, 603
BseLI	CCNNNNNNNGG	3 cut(s)	125, 516, 707
BseMII	CTCAG	2 cut(s)	98, 348
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	3 cut(s)	185, 410, 723
BseXI	GCAGC	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	881
BshFI	GGCC	2 cut(s)	525, 700
BsiEI	CGRYCG	1 cut(s)	881
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	323, 469
BslI	CCNNNNNNNGG	3 cut(s)	125, 516, 707
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	323, 469
BsmI	GAATGC	2 cut(s)	367, 470
BsnI	GGCC	2 cut(s)	525, 700
Bsp143I	GATC	4 cut(s)	11, 33, 659, 878
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	525, 700
BspCNI	CTCAG	2 cut(s)	97, 349
BspHI	TCATGA	1 cut(s)	474
BspPI	GGATC	1 cut(s)	667
BspQI	GCTCTTC	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	11, 33, 659, 878
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	589, 869
Bst6I	CTCTTC	2 cut(s)	435, 673
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	84, 357
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	66, 432, 603
BstKTI	GATC	4 cut(s)	14, 36, 662, 881
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	4 cut(s)	11, 33, 659, 878
BstMCI	CGRYCG	1 cut(s)	881
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	2 cut(s)	118, 645
BstSCI	CCNGG	2 cut(s)	124, 435
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	525, 700
BtsCI	GGATG	3 cut(s)	66, 432, 603
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	6 cut(s)	115, 299, 475, 516, 521, 642
CviJI	RGCY	9 cut(s)	181, 338, 353, 449, 525, 536, 666, 677, 700
CviKI_1	RGCY	9 cut(s)	181, 338, 353, 449, 525, 536, 666, 677, 700
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	2 cut(s)	84, 357
DpnI	GATC	4 cut(s)	13, 35, 661, 880
DpnII	GATC	4 cut(s)	11, 33, 659, 878
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	435, 673
EarI	CTCTTC	2 cut(s)	435, 673
Eco32I	GATATC	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	171, 801
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	90
FaeI	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
FaqI	GGGAC	2 cut(s)	323, 469
FatI	CATG	6 cut(s)	114, 298, 474, 515, 520, 641
FauNDI	CATATG	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	3 cut(s)	73, 419, 610
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	2 cut(s)	620, 907
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	525, 700
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	5 cut(s)	388, 478, 506, 601, 719
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	3 cut(s)	87, 190, 483
Hpy188III	TCNNGA	6 cut(s)	15, 356, 392, 475, 510, 775
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	4 cut(s)	413, 587, 639, 800
HpyCH4III	ACNGT	2 cut(s)	589, 869
HpyCH4V	TGCA	3 cut(s)	131, 432, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	2 cut(s)	84, 357
Hsp92II	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	11, 33, 659, 878
LguI	GCTCTTC	1 cut(s)	673
LmnI	GCTCC	2 cut(s)	358, 647
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	3 cut(s)	441, 778, 837
MaeI	CTAG	2 cut(s)	620, 907
MalI	GATC	4 cut(s)	13, 35, 661, 880
MboI	GATC	4 cut(s)	11, 33, 659, 878
MboII	GAAGA	8 cut(s)	257, 260, 452, 623, 635, 660, 794, 797
MflI	RGATCY	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	6 cut(s)	253, 288, 325, 527, 544, 727
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	3 cut(s)	397, 472, 610
MmeI	TCCRAC	1 cut(s)	45
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	273, 741
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	338, 497
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	126, 437
Mva1269I	GAATGC	2 cut(s)	367, 470
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	797
NciI	CCSGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	4 cut(s)	11, 33, 659, 878
NlaIII	CATG	6 cut(s)	118, 302, 478, 519, 524, 645
NspI	RCATGY	2 cut(s)	118, 645
PagI	TCATGA	1 cut(s)	474
PciI	ACATGT	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	673
PctI	GAATGC	2 cut(s)	367, 470
PfeI	GAWTC	2 cut(s)	506, 719
PflMI	CCANNNNNTGG	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	499
Ple19I	CGATCG	1 cut(s)	881
PleI	GAGTC	3 cut(s)	396, 472, 609
PpsI	GAGTC	3 cut(s)	396, 472, 609
PscI	ACATGT	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	673
SaqAI	TTAA	2 cut(s)	273, 741
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	4 cut(s)	11, 33, 659, 878
Sau96I	GGNCC	1 cut(s)	698
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	3 cut(s)	397, 472, 610
ScrFI	CCNGG	2 cut(s)	126, 437
SfaNI	GCATC	3 cut(s)	441, 778, 837
SfcI	CTRYAG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	272, 422
SmoI	CTYRAG	2 cut(s)	272, 422
Sse9I	AATT	6 cut(s)	253, 288, 325, 527, 544, 727
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	620, 907
StyD4I	CCNGG	2 cut(s)	124, 435
TaaI	ACNGT	2 cut(s)	589, 869
TaqI	TCGA	5 cut(s)	103, 215, 841, 853, 877
TasI	AATT	6 cut(s)	253, 288, 325, 527, 544, 727
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	506, 719
Tru1I	TTAA	2 cut(s)	273, 741
Tru9I	TTAA	2 cut(s)	273, 741
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	463, 546, 621, 819
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	516
Vha464I	CTTAAG	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	3 cut(s)	253, 325, 544
XceI	RCATGY	2 cut(s)	118, 645
XspI	CTAG	2 cut(s)	620, 907
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.