Rmu_sc0001519.1_g000001

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001519.1
Physical Location & Seq
Reverse (-)
883 .. 3162
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001519.1_g000001.1.cds

Sequence Viewer

Length: 1482 bp
atgaggtcatgggcagattctgtaggtaatgatggagacaatgcagacgctggttcgtctgaaaataacagctcatctcgtccatctgacaatagaagctcatcgcgcccgtctgacaatagcagctcatctcgtcctgcacgatcaacttatgttccgccacatcttcgtaataggcctccgtctgctgatcctccggctccttcacagactaccctgccaccagccaatgtaggttataatgggcctgcagctgggtctgcctggggtggtggtggtggttttaggtctgatgttgggcgtgggggatatgtaggtagtggtggtggtggcggtggcggtggtcgaggtggtggtggttggaacaatagaagtggagggtgggaccgtgggagggaacgggaggtaaatccctttgctgatgacgataacacagaacagccctttgagcaagaaaacacaggcatcaactttgatgcttatgaggatatcccagttgaaactagtggatctgatgtcccgcctcctgtgaatacttttgcagagatagatctaggggacgcattgaatttaaatattaggagatgcaagtatgtgaggccaactcctgttcagcgtcatgcaataccgatctctcttgcaggacgagatttgatggcctgtgctcagacaggttctggcaagacagctgctttctgctttccaattattagtgggatcatgcaggagcagtatgctcagagacctcgtggagcacgtactgtgtatcctcttgctcttattctctcccctactagagaactctcgtgtcagatacatgaagaagctagaaagttttcttatcaaactggtgtcaaggtggtagttgcttacggaggagcgccaataaaccaacagttgagagagcttgaaagaggagtagatattcttgtggcaactccgggtcgattggtagatctgcttgagagagctagagtatcattgcagatgatacgatatttggctcttgatgaggcagatcggatgctggacatgggttttgagcctcaaattaggaagatagtggaacagatggacatgcctccaccaggtttgagacagaccatgctattcagtgcaacctttccaaaggagatacagagactggcgtcggattttctggcaaactatatatttttggctgttggaagggttggctcaagtactgatttaattgttcaaagagttgaatttgttcatgaatctgataagagaagtcatctcatggacctccttcacgcacaaagggaaaatggaactcatggcaagcaagctttgacattagtttttgtggagacaaagaagggagcagatgcactggaacactggttgtgtattaatgggtttccggcaactactattcatggtgacagaacacaacaggttagctggttcgagattaatctagggtataagaagtgttttcaactgctttgtgtctga

Protein Analysis

493

Amino Acids

53.65

Weight (kDa)

6.19

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AccII CGCG 1 cut(s) 106
AciI CCGC 4 cut(s) 158, 333, 339, 521
AclWI GGATC 3 cut(s) 185, 517, 725
AcsI RAATTY 2 cut(s) 568, 1229
AcyI GRCGYC 1 cut(s) 1148
AfaI GTAC 2 cut(s) 760, 1204
AfiI CCNNNNNNNGG 3 cut(s) 254, 394, 1088
AgsI TTSAA 6 cut(s) 500, 568, 911, 1220, 1229, 1466
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 2 cut(s) 263, 1087
Alw21I GWGCWC 2 cut(s) 667, 757
Alw26I GTCTC 5 cut(s) 30, 736, 1090, 1135, 1328
AlwI GGATC 3 cut(s) 185, 517, 725
AlwNI CAGNNNCTG 4 cut(s) 20, 50, 677, 1144
AoxI GGCC 4 cut(s) 176, 245, 599, 657
ApeKI GCWGC 3 cut(s) 123, 251, 689
ApoI RAATTY 2 cut(s) 568, 1229
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
AseI ATTAAT 2 cut(s) 1377, 1440
Asp700I GAANNNNTTC 2 cut(s) 835, 1233
AspLEI GCGC 2 cut(s) 108, 883
AspS9I GGNCC 3 cut(s) 245, 385, 1267
AsuC2I CCSGG 1 cut(s) 942
AsuHPI GGTGA 1 cut(s) 1418
AvaII GGWCC 2 cut(s) 385, 1267
BauI CACGAG 2 cut(s) 747, 805
Bbv12I GWGCWC 2 cut(s) 667, 757
BbvI GCAGC 3 cut(s) 135, 263, 676
BccI CCATC 4 cut(s) 26, 91, 649, 1066
BciT130I CCWGG 2 cut(s) 265, 1089
BciVI GTATCC 1 cut(s) 777
BcnI CCSGG 1 cut(s) 942
BcoDI GTCTC 5 cut(s) 30, 736, 1090, 1135, 1328
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 6 cut(s) 504, 554, 795, 828, 972, 1445
BfmI CTRYAG 2 cut(s) 21, 249
BfoI RGCGCY 1 cut(s) 884
BfuI GTATCC 1 cut(s) 777
BglII AGATCT 2 cut(s) 550, 955
BisI GCNGC 3 cut(s) 124, 252, 690
BlsI GCNGC 3 cut(s) 125, 253, 691
BmcAI AGTACT 1 cut(s) 1204
Bme1390I CCNGG 3 cut(s) 265, 942, 1089
Bme18I GGWCC 2 cut(s) 385, 1267
BmgT120I GGNCC 3 cut(s) 245, 385, 1267
BmiI GGNNCC 2 cut(s) 201, 386
BmrFI CCNGG 3 cut(s) 265, 942, 1089
BmrI ACTGGG 1 cut(s) 488
BmsI GCATC 5 cut(s) 466, 474, 575, 1014, 1342
BmuI ACTGGG 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 1147
BplI GAGNNNNNCTC 2 cut(s) 589, 621
BpuEI CTTGAG 2 cut(s) 983, 1183
BpuMI CCSGG 1 cut(s) 942
BsaAI YACGTR 1 cut(s) 758
BsaHI GRCGYC 1 cut(s) 1148
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 2 cut(s) 264, 388
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 394, 1088
Bse1I ACTGG 5 cut(s) 494, 853, 1149, 1362, 1370
Bse3DI GCAATG 1 cut(s) 980
BseBI CCWGG 2 cut(s) 265, 1089
BseDI CCNNGG 2 cut(s) 264, 388
BseGI GGATG 1 cut(s) 1029
BseLI CCNNNNNNNGG 3 cut(s) 254, 394, 1088
BseMI GCAATG 1 cut(s) 980
BseMII CTCAG 2 cut(s) 680, 752
BseNI ACTGG 5 cut(s) 494, 853, 1149, 1362, 1370
BseRI GAGGAG 2 cut(s) 891, 930
BseXI GCAGC 3 cut(s) 135, 263, 676
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 4 cut(s) 178, 247, 601, 659
BsiHKAI GWGCWC 2 cut(s) 667, 757
BsiSI CCGG 3 cut(s) 197, 941, 1388
BslFI GGGAC 3 cut(s) 398, 503, 572
BslI CCNNNNNNNGG 3 cut(s) 254, 394, 1088
BsmAI GTCTC 5 cut(s) 30, 736, 1090, 1135, 1328
BsmFI GGGAC 3 cut(s) 398, 503, 572
BsnI GGCC 4 cut(s) 178, 247, 601, 659
Bso31I GGTCTC 1 cut(s) 736
Bsp1286I GDGCHC 2 cut(s) 667, 757
Bsp143I GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
BspACI CCGC 4 cut(s) 158, 333, 339, 521
BspANI GGCC 4 cut(s) 178, 247, 601, 659
BspCNI CTCAG 2 cut(s) 679, 751
BspFNI CGCG 1 cut(s) 106
BspHI TCATGA 1 cut(s) 1237
BspLI GGNNCC 2 cut(s) 201, 386
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 3 cut(s) 185, 517, 725
BspTNI GGTCTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 980
BsrI ACTGG 5 cut(s) 494, 853, 1149, 1362, 1370
BssECI CCNNGG 2 cut(s) 264, 388
BssMI GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
BssNI GRCGYC 1 cut(s) 1148
BssSI CACGAG 2 cut(s) 747, 805
Bst2BI CACGAG 2 cut(s) 747, 805
Bst2UI CCWGG 2 cut(s) 265, 1089
Bst4CI ACNGT 3 cut(s) 389, 763, 897
BstACI GRCGYC 1 cut(s) 1148
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 249, 1307, 1311
BstDEI CTNAG 2 cut(s) 666, 738
BstDSI CCRYGG 1 cut(s) 388
BstENI CCTNNNNNAGG 1 cut(s) 1086
BstF5I GGATG 1 cut(s) 1029
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 884
BstHHI GCGC 2 cut(s) 108, 883
BstKTI GATC 8 cut(s) 146, 193, 512, 553, 633, 720, 958, 1021
BstMAI GTCTC 5 cut(s) 30, 736, 1090, 1135, 1328
BstMBI GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 105, 260, 448
BstNI CCWGG 2 cut(s) 265, 1089
BstNSI RCATGY 1 cut(s) 1081
BstPAI GACNNNNGTC 1 cut(s) 1147
BstSCI CCNGG 3 cut(s) 263, 940, 1087
BstSFI CTRYAG 2 cut(s) 21, 249
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 135, 263, 676
BstX2I RGATCY 3 cut(s) 509, 550, 955
BstYI RGATCY 3 cut(s) 509, 550, 955
BsuI GTATCC 1 cut(s) 777
BsuRI GGCC 4 cut(s) 178, 247, 601, 659
BtgI CCRYGG 1 cut(s) 388
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 1029
BtsIMutI CAGTG 3 cut(s) 1120, 1355, 1363
Cac8I GCNNGC 3 cut(s) 249, 1307, 1311
CaiI CAGNNNCTG 4 cut(s) 20, 50, 677, 1144
CciI TCATGA 1 cut(s) 1237
CfoI GCGC 2 cut(s) 108, 883
Cfr13I GGNCC 3 cut(s) 245, 385, 1267
CseI GACGC 4 cut(s) 56, 569, 605, 1137
CsiI ACCWGGT 1 cut(s) 1087
Csp6I GTAC 2 cut(s) 759, 1203
CspCI CAANNNNNGTGG 4 cut(s) 355, 390, 1074, 1109
CviQI GTAC 2 cut(s) 759, 1203
DdeI CTNAG 2 cut(s) 666, 738
DpnI GATC 8 cut(s) 145, 192, 511, 552, 632, 719, 957, 1020
DpnII GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
DraI TTTAAA 1 cut(s) 573
EciI GGCGGA 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 736
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 2 cut(s) 385, 1267
EcoNI CCTNNNNNAGG 1 cut(s) 1086
EcoRII CCWGG 2 cut(s) 263, 1087
EcoRV GATATC 1 cut(s) 490
FaqI GGGAC 3 cut(s) 398, 503, 572
FauI CCCGC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 124, 252, 690
FokI GGATG 1 cut(s) 1036
Fsp4HI GCNGC 3 cut(s) 124, 252, 690
FspBI CTAG 6 cut(s) 504, 554, 795, 828, 972, 1445
GlaI GCGC 2 cut(s) 107, 882
GluI GCNGC 3 cut(s) 124, 252, 690
GsaI CCCAGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 884
HaeIII GGCC 4 cut(s) 178, 247, 601, 659
HapII CCGG 3 cut(s) 197, 941, 1388
HgaI GACGC 4 cut(s) 56, 569, 605, 1137
HhaI GCGC 2 cut(s) 108, 883
Hin1I GRCGYC 1 cut(s) 1148
Hin6I GCGC 2 cut(s) 106, 881
HinP1I GCGC 2 cut(s) 106, 881
HindIII AAGCTT 1 cut(s) 1311
HinfI GANTC 2 cut(s) 17, 1241
HpaII CCGG 3 cut(s) 197, 941, 1388
HphI GGTGA 1 cut(s) 1418
Hpy188III TCNNGA 3 cut(s) 1007, 1238, 1435
Hpy99I CGWCG 1 cut(s) 1153
HpyAV CCTTC 4 cut(s) 213, 1182, 1283, 1336
HpyCH4III ACNGT 3 cut(s) 389, 763, 897
HpyCH4IV ACGT 1 cut(s) 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 260, 448
HpyF3I CTNAG 2 cut(s) 666, 738
HpySE526I ACGT 1 cut(s) 757
Hsp92I GRCGYC 1 cut(s) 1148
HspAI GCGC 2 cut(s) 106, 881
Kzo9I GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
LmnI GCTCC 5 cut(s) 205, 727, 752, 878, 1346
Lsp1109I GCAGC 3 cut(s) 135, 263, 676
LweI GCATC 5 cut(s) 466, 474, 575, 1014, 1342
MabI ACCWGGT 1 cut(s) 1087
MaeI CTAG 6 cut(s) 504, 554, 795, 828, 972, 1445
MaeII ACGT 1 cut(s) 757
MaeIII GTNAC 1 cut(s) 1406
MalI GATC 8 cut(s) 145, 192, 511, 552, 632, 719, 957, 1020
MboI GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
MboII GAAGA 3 cut(s) 158, 833, 1069
MflI RGATCY 3 cut(s) 509, 550, 955
MhlI GDGCHC 2 cut(s) 667, 757
MluCI AATT 5 cut(s) 568, 705, 1050, 1212, 1229
MmeI TCCRAC 3 cut(s) 341, 1131, 1165
MroXI GAANNNNTTC 2 cut(s) 835, 1233
MseI TTAA 4 cut(s) 572, 1211, 1377, 1440
MspA1I CMGCKG 2 cut(s) 254, 689
MspI CCGG 3 cut(s) 197, 941, 1388
MspR9I CCNGG 3 cut(s) 265, 942, 1089
MvaI CCWGG 2 cut(s) 265, 1089
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 105, 260, 448
NciI CCSGG 1 cut(s) 942
NdeII GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
NlaIV GGNNCC 2 cut(s) 201, 386
NmuCI GTSAC 1 cut(s) 1406
NspI RCATGY 1 cut(s) 1081
PagI TCATGA 1 cut(s) 1237
PceI AGGCCT 1 cut(s) 178
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 754
PdmI GAANNNNTTC 2 cut(s) 835, 1233
PfeI GAWTC 2 cut(s) 17, 1241
PkrI GCNGC 3 cut(s) 125, 253, 691
Ppu21I YACGTR 1 cut(s) 758
PshAI GACNNNNGTC 1 cut(s) 1147
PshBI ATTAAT 2 cut(s) 1377, 1440
PsiI TTATAA 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 263, 1087
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 2 cut(s) 263, 1087
PspN4I GGNNCC 2 cut(s) 201, 386
PspPI GGNCC 3 cut(s) 245, 385, 1267
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 4 cut(s) 20, 50, 677, 1144
PsuI RGATCY 3 cut(s) 509, 550, 955
PvuII CAGCTG 2 cut(s) 254, 689
RsaI GTAC 2 cut(s) 760, 1204
RsaNI GTAC 2 cut(s) 759, 1203
SaqAI TTAA 4 cut(s) 572, 1211, 1377, 1440
SatI GCNGC 3 cut(s) 124, 252, 690
Sau3AI GATC 8 cut(s) 143, 190, 509, 550, 630, 717, 955, 1018
Sau96I GGNCC 3 cut(s) 245, 385, 1267
ScaI AGTACT 1 cut(s) 1204
ScrFI CCNGG 3 cut(s) 265, 942, 1089
SduI GDGCHC 2 cut(s) 667, 757
SexAI ACCWGGT 1 cut(s) 1087
SfaNI GCATC 5 cut(s) 466, 474, 575, 1014, 1342
SfcI CTRYAG 2 cut(s) 21, 249
SinI GGWCC 2 cut(s) 385, 1267
SmiI ATTTAAAT 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 962, 1198
SmoI CTYRAG 2 cut(s) 962, 1198
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 5 cut(s) 568, 705, 1050, 1212, 1229
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 4 cut(s) 158, 333, 339, 521
SspI AATATT 1 cut(s) 577
SspMI CTAG 6 cut(s) 504, 554, 795, 828, 972, 1445
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 3 cut(s) 263, 940, 1087
SwaI ATTTAAAT 1 cut(s) 573
TaaI ACNGT 3 cut(s) 389, 763, 897
TaiI ACGT 1 cut(s) 760
TaqI TCGA 3 cut(s) 346, 946, 1434
TasI AATT 5 cut(s) 568, 705, 1050, 1212, 1229
TatI WGTACW 1 cut(s) 1202
TfiI GAWTC 2 cut(s) 17, 1241
Tru1I TTAA 4 cut(s) 572, 1211, 1377, 1440
Tru9I TTAA 4 cut(s) 572, 1211, 1377, 1440
TscAI CASTG 3 cut(s) 1120, 1362, 1370
TseFI GTSAC 1 cut(s) 1406
TseI GCWGC 3 cut(s) 123, 251, 689
Tsp45I GTSAC 1 cut(s) 1406
TspDTI ATGAA 4 cut(s) 834, 1226, 1254, 1391
TspGWI ACGGA 2 cut(s) 171, 888
TspRI CASTG 3 cut(s) 1120, 1362, 1370
VpaK11BI GGWCC 2 cut(s) 385, 1267
VspI ATTAAT 2 cut(s) 1377, 1440
XagI CCTNNNNNAGG 1 cut(s) 1086
XapI RAATTY 2 cut(s) 568, 1229
XceI RCATGY 1 cut(s) 1081
XmnI GAANNNNTTC 2 cut(s) 835, 1233
XspI CTAG 6 cut(s) 504, 554, 795, 828, 972, 1445
ZrmI AGTACT 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.