DEAD-box ATP-dependent RNA helicase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 240 |
| AccII | CGCG | 1 cut(s) | 106 |
| AciI | CCGC | 4 cut(s) | 158, 333, 339, 521 |
| AclWI | GGATC | 3 cut(s) | 185, 517, 725 |
| AcsI | RAATTY | 2 cut(s) | 568, 1229 |
| AcyI | GRCGYC | 1 cut(s) | 1148 |
| AfaI | GTAC | 2 cut(s) | 760, 1204 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 254, 394, 1088 |
| AgsI | TTSAA | 6 cut(s) | 500, 568, 911, 1220, 1229, 1466 |
| AhlI | ACTAGT | 1 cut(s) | 503 |
| AjnI | CCWGG | 2 cut(s) | 263, 1087 |
| Alw21I | GWGCWC | 2 cut(s) | 667, 757 |
| Alw26I | GTCTC | 5 cut(s) | 30, 736, 1090, 1135, 1328 |
| AlwI | GGATC | 3 cut(s) | 185, 517, 725 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 20, 50, 677, 1144 |
| AoxI | GGCC | 4 cut(s) | 176, 245, 599, 657 |
| ApeKI | GCWGC | 3 cut(s) | 123, 251, 689 |
| ApoI | RAATTY | 2 cut(s) | 568, 1229 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1022, 1054 |
| AseI | ATTAAT | 2 cut(s) | 1377, 1440 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 835, 1233 |
| AspLEI | GCGC | 2 cut(s) | 108, 883 |
| AspS9I | GGNCC | 3 cut(s) | 245, 385, 1267 |
| AsuC2I | CCSGG | 1 cut(s) | 942 |
| AsuHPI | GGTGA | 1 cut(s) | 1418 |
| AvaII | GGWCC | 2 cut(s) | 385, 1267 |
| BauI | CACGAG | 2 cut(s) | 747, 805 |
| Bbv12I | GWGCWC | 2 cut(s) | 667, 757 |
| BbvI | GCAGC | 3 cut(s) | 135, 263, 676 |
| BccI | CCATC | 4 cut(s) | 26, 91, 649, 1066 |
| BciT130I | CCWGG | 2 cut(s) | 265, 1089 |
| BciVI | GTATCC | 1 cut(s) | 777 |
| BcnI | CCSGG | 1 cut(s) | 942 |
| BcoDI | GTCTC | 5 cut(s) | 30, 736, 1090, 1135, 1328 |
| BcuI | ACTAGT | 1 cut(s) | 503 |
| BfaI | CTAG | 6 cut(s) | 504, 554, 795, 828, 972, 1445 |
| BfmI | CTRYAG | 2 cut(s) | 21, 249 |
| BfoI | RGCGCY | 1 cut(s) | 884 |
| BfuI | GTATCC | 1 cut(s) | 777 |
| BglII | AGATCT | 2 cut(s) | 550, 955 |
| BisI | GCNGC | 3 cut(s) | 124, 252, 690 |
| BlsI | GCNGC | 3 cut(s) | 125, 253, 691 |
| BmcAI | AGTACT | 1 cut(s) | 1204 |
| Bme1390I | CCNGG | 3 cut(s) | 265, 942, 1089 |
| Bme18I | GGWCC | 2 cut(s) | 385, 1267 |
| BmgT120I | GGNCC | 3 cut(s) | 245, 385, 1267 |
| BmiI | GGNNCC | 2 cut(s) | 201, 386 |
| BmrFI | CCNGG | 3 cut(s) | 265, 942, 1089 |
| BmrI | ACTGGG | 1 cut(s) | 488 |
| BmsI | GCATC | 5 cut(s) | 466, 474, 575, 1014, 1342 |
| BmuI | ACTGGG | 1 cut(s) | 488 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1147 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 589, 621 |
| BpuEI | CTTGAG | 2 cut(s) | 983, 1183 |
| BpuMI | CCSGG | 1 cut(s) | 942 |
| BsaAI | YACGTR | 1 cut(s) | 758 |
| BsaHI | GRCGYC | 1 cut(s) | 1148 |
| BsaI | GGTCTC | 1 cut(s) | 736 |
| BsaJI | CCNNGG | 2 cut(s) | 264, 388 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 254, 394, 1088 |
| Bse1I | ACTGG | 5 cut(s) | 494, 853, 1149, 1362, 1370 |
| Bse3DI | GCAATG | 1 cut(s) | 980 |
| BseBI | CCWGG | 2 cut(s) | 265, 1089 |
| BseDI | CCNNGG | 2 cut(s) | 264, 388 |
| BseGI | GGATG | 1 cut(s) | 1029 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 254, 394, 1088 |
| BseMI | GCAATG | 1 cut(s) | 980 |
| BseMII | CTCAG | 2 cut(s) | 680, 752 |
| BseNI | ACTGG | 5 cut(s) | 494, 853, 1149, 1362, 1370 |
| BseRI | GAGGAG | 2 cut(s) | 891, 930 |
| BseXI | GCAGC | 3 cut(s) | 135, 263, 676 |
| BseYI | CCCAGC | 1 cut(s) | 254 |
| BsgI | GTGCAG | 1 cut(s) | 123 |
| Bsh1236I | CGCG | 1 cut(s) | 106 |
| BshFI | GGCC | 4 cut(s) | 178, 247, 601, 659 |
| BsiHKAI | GWGCWC | 2 cut(s) | 667, 757 |
| BsiSI | CCGG | 3 cut(s) | 197, 941, 1388 |
| BslFI | GGGAC | 3 cut(s) | 398, 503, 572 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 254, 394, 1088 |
| BsmAI | GTCTC | 5 cut(s) | 30, 736, 1090, 1135, 1328 |
| BsmFI | GGGAC | 3 cut(s) | 398, 503, 572 |
| BsnI | GGCC | 4 cut(s) | 178, 247, 601, 659 |
| Bso31I | GGTCTC | 1 cut(s) | 736 |
| Bsp1286I | GDGCHC | 2 cut(s) | 667, 757 |
| Bsp143I | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| BspACI | CCGC | 4 cut(s) | 158, 333, 339, 521 |
| BspANI | GGCC | 4 cut(s) | 178, 247, 601, 659 |
| BspCNI | CTCAG | 2 cut(s) | 679, 751 |
| BspFNI | CGCG | 1 cut(s) | 106 |
| BspHI | TCATGA | 1 cut(s) | 1237 |
| BspLI | GGNNCC | 2 cut(s) | 201, 386 |
| BspMAI | CTGCAG | 1 cut(s) | 253 |
| BspPI | GGATC | 3 cut(s) | 185, 517, 725 |
| BspTNI | GGTCTC | 1 cut(s) | 736 |
| BsrDI | GCAATG | 1 cut(s) | 980 |
| BsrI | ACTGG | 5 cut(s) | 494, 853, 1149, 1362, 1370 |
| BssECI | CCNNGG | 2 cut(s) | 264, 388 |
| BssMI | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| BssNI | GRCGYC | 1 cut(s) | 1148 |
| BssSI | CACGAG | 2 cut(s) | 747, 805 |
| Bst2BI | CACGAG | 2 cut(s) | 747, 805 |
| Bst2UI | CCWGG | 2 cut(s) | 265, 1089 |
| Bst4CI | ACNGT | 3 cut(s) | 389, 763, 897 |
| BstACI | GRCGYC | 1 cut(s) | 1148 |
| BstBAI | YACGTR | 1 cut(s) | 758 |
| BstC8I | GCNNGC | 3 cut(s) | 249, 1307, 1311 |
| BstDEI | CTNAG | 2 cut(s) | 666, 738 |
| BstDSI | CCRYGG | 1 cut(s) | 388 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1086 |
| BstF5I | GGATG | 1 cut(s) | 1029 |
| BstFNI | CGCG | 1 cut(s) | 106 |
| BstH2I | RGCGCY | 1 cut(s) | 884 |
| BstHHI | GCGC | 2 cut(s) | 108, 883 |
| BstKTI | GATC | 8 cut(s) | 146, 193, 512, 553, 633, 720, 958, 1021 |
| BstMAI | GTCTC | 5 cut(s) | 30, 736, 1090, 1135, 1328 |
| BstMBI | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 105, 260, 448 |
| BstNI | CCWGG | 2 cut(s) | 265, 1089 |
| BstNSI | RCATGY | 1 cut(s) | 1081 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1147 |
| BstSCI | CCNGG | 3 cut(s) | 263, 940, 1087 |
| BstSFI | CTRYAG | 2 cut(s) | 21, 249 |
| BstUI | CGCG | 1 cut(s) | 106 |
| BstV1I | GCAGC | 3 cut(s) | 135, 263, 676 |
| BstX2I | RGATCY | 3 cut(s) | 509, 550, 955 |
| BstYI | RGATCY | 3 cut(s) | 509, 550, 955 |
| BsuI | GTATCC | 1 cut(s) | 777 |
| BsuRI | GGCC | 4 cut(s) | 178, 247, 601, 659 |
| BtgI | CCRYGG | 1 cut(s) | 388 |
| BtgZI | GCGATG | 1 cut(s) | 87 |
| BtsCI | GGATG | 1 cut(s) | 1029 |
| BtsIMutI | CAGTG | 3 cut(s) | 1120, 1355, 1363 |
| Cac8I | GCNNGC | 3 cut(s) | 249, 1307, 1311 |
| CaiI | CAGNNNCTG | 4 cut(s) | 20, 50, 677, 1144 |
| CciI | TCATGA | 1 cut(s) | 1237 |
| CfoI | GCGC | 2 cut(s) | 108, 883 |
| Cfr13I | GGNCC | 3 cut(s) | 245, 385, 1267 |
| CseI | GACGC | 4 cut(s) | 56, 569, 605, 1137 |
| CsiI | ACCWGGT | 1 cut(s) | 1087 |
| Csp6I | GTAC | 2 cut(s) | 759, 1203 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 355, 390, 1074, 1109 |
| CviQI | GTAC | 2 cut(s) | 759, 1203 |
| DdeI | CTNAG | 2 cut(s) | 666, 738 |
| DpnI | GATC | 8 cut(s) | 145, 192, 511, 552, 632, 719, 957, 1020 |
| DpnII | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| DraI | TTTAAA | 1 cut(s) | 573 |
| EciI | GGCGGA | 1 cut(s) | 147 |
| Eco147I | AGGCCT | 1 cut(s) | 178 |
| Eco31I | GGTCTC | 1 cut(s) | 736 |
| Eco32I | GATATC | 1 cut(s) | 490 |
| Eco47I | GGWCC | 2 cut(s) | 385, 1267 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1086 |
| EcoRII | CCWGG | 2 cut(s) | 263, 1087 |
| EcoRV | GATATC | 1 cut(s) | 490 |
| FaqI | GGGAC | 3 cut(s) | 398, 503, 572 |
| FauI | CCCGC | 1 cut(s) | 528 |
| Fnu4HI | GCNGC | 3 cut(s) | 124, 252, 690 |
| FokI | GGATG | 1 cut(s) | 1036 |
| Fsp4HI | GCNGC | 3 cut(s) | 124, 252, 690 |
| FspBI | CTAG | 6 cut(s) | 504, 554, 795, 828, 972, 1445 |
| GlaI | GCGC | 2 cut(s) | 107, 882 |
| GluI | GCNGC | 3 cut(s) | 124, 252, 690 |
| GsaI | CCCAGC | 1 cut(s) | 258 |
| HaeII | RGCGCY | 1 cut(s) | 884 |
| HaeIII | GGCC | 4 cut(s) | 178, 247, 601, 659 |
| HapII | CCGG | 3 cut(s) | 197, 941, 1388 |
| HgaI | GACGC | 4 cut(s) | 56, 569, 605, 1137 |
| HhaI | GCGC | 2 cut(s) | 108, 883 |
| Hin1I | GRCGYC | 1 cut(s) | 1148 |
| Hin6I | GCGC | 2 cut(s) | 106, 881 |
| HinP1I | GCGC | 2 cut(s) | 106, 881 |
| HindIII | AAGCTT | 1 cut(s) | 1311 |
| HinfI | GANTC | 2 cut(s) | 17, 1241 |
| HpaII | CCGG | 3 cut(s) | 197, 941, 1388 |
| HphI | GGTGA | 1 cut(s) | 1418 |
| Hpy188III | TCNNGA | 3 cut(s) | 1007, 1238, 1435 |
| Hpy99I | CGWCG | 1 cut(s) | 1153 |
| HpyAV | CCTTC | 4 cut(s) | 213, 1182, 1283, 1336 |
| HpyCH4III | ACNGT | 3 cut(s) | 389, 763, 897 |
| HpyCH4IV | ACGT | 1 cut(s) | 757 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 105, 260, 448 |
| HpyF3I | CTNAG | 2 cut(s) | 666, 738 |
| HpySE526I | ACGT | 1 cut(s) | 757 |
| Hsp92I | GRCGYC | 1 cut(s) | 1148 |
| HspAI | GCGC | 2 cut(s) | 106, 881 |
| Kzo9I | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| LmnI | GCTCC | 5 cut(s) | 205, 727, 752, 878, 1346 |
| Lsp1109I | GCAGC | 3 cut(s) | 135, 263, 676 |
| LweI | GCATC | 5 cut(s) | 466, 474, 575, 1014, 1342 |
| MabI | ACCWGGT | 1 cut(s) | 1087 |
| MaeI | CTAG | 6 cut(s) | 504, 554, 795, 828, 972, 1445 |
| MaeII | ACGT | 1 cut(s) | 757 |
| MaeIII | GTNAC | 1 cut(s) | 1406 |
| MalI | GATC | 8 cut(s) | 145, 192, 511, 552, 632, 719, 957, 1020 |
| MboI | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| MboII | GAAGA | 3 cut(s) | 158, 833, 1069 |
| MflI | RGATCY | 3 cut(s) | 509, 550, 955 |
| MhlI | GDGCHC | 2 cut(s) | 667, 757 |
| MluCI | AATT | 5 cut(s) | 568, 705, 1050, 1212, 1229 |
| MmeI | TCCRAC | 3 cut(s) | 341, 1131, 1165 |
| MroXI | GAANNNNTTC | 2 cut(s) | 835, 1233 |
| MseI | TTAA | 4 cut(s) | 572, 1211, 1377, 1440 |
| MspA1I | CMGCKG | 2 cut(s) | 254, 689 |
| MspI | CCGG | 3 cut(s) | 197, 941, 1388 |
| MspR9I | CCNGG | 3 cut(s) | 265, 942, 1089 |
| MvaI | CCWGG | 2 cut(s) | 265, 1089 |
| MvnI | CGCG | 1 cut(s) | 106 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 105, 260, 448 |
| NciI | CCSGG | 1 cut(s) | 942 |
| NdeII | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| NlaIV | GGNNCC | 2 cut(s) | 201, 386 |
| NmuCI | GTSAC | 1 cut(s) | 1406 |
| NspI | RCATGY | 1 cut(s) | 1081 |
| PagI | TCATGA | 1 cut(s) | 1237 |
| PceI | AGGCCT | 1 cut(s) | 178 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 139, 754 |
| PdmI | GAANNNNTTC | 2 cut(s) | 835, 1233 |
| PfeI | GAWTC | 2 cut(s) | 17, 1241 |
| PkrI | GCNGC | 3 cut(s) | 125, 253, 691 |
| Ppu21I | YACGTR | 1 cut(s) | 758 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1147 |
| PshBI | ATTAAT | 2 cut(s) | 1377, 1440 |
| PsiI | TTATAA | 1 cut(s) | 240 |
| Psp6I | CCWGG | 2 cut(s) | 263, 1087 |
| PspFI | CCCAGC | 1 cut(s) | 254 |
| PspGI | CCWGG | 2 cut(s) | 263, 1087 |
| PspN4I | GGNNCC | 2 cut(s) | 201, 386 |
| PspPI | GGNCC | 3 cut(s) | 245, 385, 1267 |
| PstI | CTGCAG | 1 cut(s) | 253 |
| PstNI | CAGNNNCTG | 4 cut(s) | 20, 50, 677, 1144 |
| PsuI | RGATCY | 3 cut(s) | 509, 550, 955 |
| PvuII | CAGCTG | 2 cut(s) | 254, 689 |
| RsaI | GTAC | 2 cut(s) | 760, 1204 |
| RsaNI | GTAC | 2 cut(s) | 759, 1203 |
| SaqAI | TTAA | 4 cut(s) | 572, 1211, 1377, 1440 |
| SatI | GCNGC | 3 cut(s) | 124, 252, 690 |
| Sau3AI | GATC | 8 cut(s) | 143, 190, 509, 550, 630, 717, 955, 1018 |
| Sau96I | GGNCC | 3 cut(s) | 245, 385, 1267 |
| ScaI | AGTACT | 1 cut(s) | 1204 |
| ScrFI | CCNGG | 3 cut(s) | 265, 942, 1089 |
| SduI | GDGCHC | 2 cut(s) | 667, 757 |
| SexAI | ACCWGGT | 1 cut(s) | 1087 |
| SfaNI | GCATC | 5 cut(s) | 466, 474, 575, 1014, 1342 |
| SfcI | CTRYAG | 2 cut(s) | 21, 249 |
| SinI | GGWCC | 2 cut(s) | 385, 1267 |
| SmiI | ATTTAAAT | 1 cut(s) | 573 |
| SmlI | CTYRAG | 2 cut(s) | 962, 1198 |
| SmoI | CTYRAG | 2 cut(s) | 962, 1198 |
| SpeI | ACTAGT | 1 cut(s) | 503 |
| Sse9I | AATT | 5 cut(s) | 568, 705, 1050, 1212, 1229 |
| SseBI | AGGCCT | 1 cut(s) | 178 |
| SsiI | CCGC | 4 cut(s) | 158, 333, 339, 521 |
| SspI | AATATT | 1 cut(s) | 577 |
| SspMI | CTAG | 6 cut(s) | 504, 554, 795, 828, 972, 1445 |
| StuI | AGGCCT | 1 cut(s) | 178 |
| StyD4I | CCNGG | 3 cut(s) | 263, 940, 1087 |
| SwaI | ATTTAAAT | 1 cut(s) | 573 |
| TaaI | ACNGT | 3 cut(s) | 389, 763, 897 |
| TaiI | ACGT | 1 cut(s) | 760 |
| TaqI | TCGA | 3 cut(s) | 346, 946, 1434 |
| TasI | AATT | 5 cut(s) | 568, 705, 1050, 1212, 1229 |
| TatI | WGTACW | 1 cut(s) | 1202 |
| TfiI | GAWTC | 2 cut(s) | 17, 1241 |
| Tru1I | TTAA | 4 cut(s) | 572, 1211, 1377, 1440 |
| Tru9I | TTAA | 4 cut(s) | 572, 1211, 1377, 1440 |
| TscAI | CASTG | 3 cut(s) | 1120, 1362, 1370 |
| TseFI | GTSAC | 1 cut(s) | 1406 |
| TseI | GCWGC | 3 cut(s) | 123, 251, 689 |
| Tsp45I | GTSAC | 1 cut(s) | 1406 |
| TspDTI | ATGAA | 4 cut(s) | 834, 1226, 1254, 1391 |
| TspGWI | ACGGA | 2 cut(s) | 171, 888 |
| TspRI | CASTG | 3 cut(s) | 1120, 1362, 1370 |
| VpaK11BI | GGWCC | 2 cut(s) | 385, 1267 |
| VspI | ATTAAT | 2 cut(s) | 1377, 1440 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1086 |
| XapI | RAATTY | 2 cut(s) | 568, 1229 |
| XceI | RCATGY | 1 cut(s) | 1081 |
| XmnI | GAANNNNTTC | 2 cut(s) | 835, 1233 |
| XspI | CTAG | 6 cut(s) | 504, 554, 795, 828, 972, 1445 |
| ZrmI | AGTACT | 1 cut(s) | 1204 |